Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17365

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17355 and RR42_RS17360 are separated by 55 nucleotidesRR42_RS17360 and RR42_RS17365 are separated by 65 nucleotidesRR42_RS17365 and RR42_RS17370 are separated by 92 nucleotidesRR42_RS17370 and RR42_RS17375 are separated by 77 nucleotidesRR42_RS17375 and RR42_RS17380 are separated by 77 nucleotides RR42_RS17355: RR42_RS17355 - hypothetical protein, at 3,756,274 to 3,757,002 _RS17355 RR42_RS17360: RR42_RS17360 - pyrroline-5-carboxylate reductase, at 3,757,058 to 3,757,882 _RS17360 RR42_RS17365: RR42_RS17365 - 4-hydroxybenzoate polyprenyltransferase, at 3,757,948 to 3,758,841 _RS17365 RR42_RS17370: RR42_RS17370 - ferritin, at 3,758,934 to 3,759,419 _RS17370 RR42_RS17375: RR42_RS17375 - hypothetical protein, at 3,759,497 to 3,759,691 _RS17375 RR42_RS17380: RR42_RS17380 - catalase, at 3,759,769 to 3,761,214 _RS17380 Position (kb) 3757 3758 3759Strain fitness (log2 ratio) -3 -2 -1 0 1at 3757.961 kb on + strandat 3757.961 kb on + strandat 3757.961 kb on + strandat 3757.961 kb on + strandat 3757.962 kb on - strandat 3759.422 kb on + strandat 3759.563 kb on + strand, within RR42_RS17375at 3759.770 kb on + strandat 3759.771 kb on - strandat 3759.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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3,757,961 + -0.3
3,757,961 + +1.0
3,757,961 + +1.3
3,757,961 + +0.2
3,757,962 - +0.7
3,759,422 + -0.6
3,759,563 + RR42_RS17375 0.34 -2.8
3,759,770 + +0.8
3,759,771 - -0.2
3,759,771 - -1.4

Or see this region's nucleotide sequence