Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11080

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11075 and RR42_RS11080 are separated by 203 nucleotidesRR42_RS11080 and RR42_RS11085 are separated by 35 nucleotides RR42_RS11075: RR42_RS11075 - acyl-CoA dehydrogenase, at 2,362,723 to 2,364,573 _RS11075 RR42_RS11080: RR42_RS11080 - phenylacetic acid degradation protein, at 2,364,777 to 2,364,932 _RS11080 RR42_RS11085: RR42_RS11085 - acetyl-CoA acetyltransferase, at 2,364,968 to 2,366,146 _RS11085 Position (kb) 2364 2365Strain fitness (log2 ratio) -1 0 1 2at 2363.853 kb on - strand, within RR42_RS11075at 2363.853 kb on - strand, within RR42_RS11075at 2363.865 kb on + strand, within RR42_RS11075at 2363.865 kb on + strand, within RR42_RS11075at 2363.866 kb on - strand, within RR42_RS11075at 2363.944 kb on - strand, within RR42_RS11075at 2364.032 kb on + strand, within RR42_RS11075at 2364.033 kb on - strand, within RR42_RS11075at 2364.287 kb on + strand, within RR42_RS11075at 2364.288 kb on - strand, within RR42_RS11075at 2364.408 kb on + strandat 2364.530 kb on + strandat 2364.530 kb on + strandat 2364.713 kb on - strandat 2364.718 kb on + strandat 2364.829 kb on + strand, within RR42_RS11080at 2364.830 kb on - strand, within RR42_RS11080at 2364.830 kb on - strand, within RR42_RS11080at 2364.841 kb on + strand, within RR42_RS11080at 2365.033 kb on - strandat 2365.098 kb on + strand, within RR42_RS11085at 2365.173 kb on + strand, within RR42_RS11085at 2365.672 kb on - strand, within RR42_RS11085at 2365.713 kb on + strand, within RR42_RS11085

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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2,363,853 - RR42_RS11075 0.61 -1.1
2,363,853 - RR42_RS11075 0.61 +0.9
2,363,865 + RR42_RS11075 0.62 +0.0
2,363,865 + RR42_RS11075 0.62 +0.4
2,363,866 - RR42_RS11075 0.62 -0.5
2,363,944 - RR42_RS11075 0.66 -0.3
2,364,032 + RR42_RS11075 0.71 +0.6
2,364,033 - RR42_RS11075 0.71 +1.5
2,364,287 + RR42_RS11075 0.84 -0.4
2,364,288 - RR42_RS11075 0.85 +0.9
2,364,408 + +0.5
2,364,530 + -0.2
2,364,530 + -1.2
2,364,713 - -1.0
2,364,718 + +0.4
2,364,829 + RR42_RS11080 0.33 +1.5
2,364,830 - RR42_RS11080 0.34 +1.5
2,364,830 - RR42_RS11080 0.34 +0.9
2,364,841 + RR42_RS11080 0.41 +1.5
2,365,033 - -1.3
2,365,098 + RR42_RS11085 0.11 -1.2
2,365,173 + RR42_RS11085 0.17 +0.1
2,365,672 - RR42_RS11085 0.60 +1.8
2,365,713 + RR42_RS11085 0.63 +0.8

Or see this region's nucleotide sequence