Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08580

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08570 and RR42_RS08575 are separated by 1 nucleotidesRR42_RS08575 and RR42_RS08580 overlap by 8 nucleotidesRR42_RS08580 and RR42_RS08585 overlap by 4 nucleotidesRR42_RS08585 and RR42_RS08590 are separated by 14 nucleotides RR42_RS08570: RR42_RS08570 - hypothetical protein, at 1,801,344 to 1,802,915 _RS08570 RR42_RS08575: RR42_RS08575 - tail protein, at 1,802,917 to 1,803,465 _RS08575 RR42_RS08580: RR42_RS08580 - baseplate assembly protein, at 1,803,458 to 1,804,366 _RS08580 RR42_RS08585: RR42_RS08585 - baseplate assembly protein, at 1,804,363 to 1,804,707 _RS08585 RR42_RS08590: RR42_RS08590 - baseplate assembly protein, at 1,804,722 to 1,805,339 _RS08590 Position (kb) 1803 1804 1805Strain fitness (log2 ratio) -1 0 1 2at 1802.677 kb on + strand, within RR42_RS08570at 1802.943 kb on - strandat 1803.284 kb on + strand, within RR42_RS08575at 1803.589 kb on - strand, within RR42_RS08580at 1803.640 kb on - strand, within RR42_RS08580at 1803.640 kb on - strand, within RR42_RS08580at 1803.702 kb on + strand, within RR42_RS08580at 1803.702 kb on + strand, within RR42_RS08580at 1803.703 kb on - strand, within RR42_RS08580at 1803.936 kb on + strand, within RR42_RS08580at 1803.937 kb on - strand, within RR42_RS08580at 1803.937 kb on - strand, within RR42_RS08580at 1804.017 kb on - strand, within RR42_RS08580at 1804.445 kb on - strand, within RR42_RS08585at 1804.448 kb on + strand, within RR42_RS08585at 1804.490 kb on - strand, within RR42_RS08585at 1804.602 kb on - strand, within RR42_RS08585at 1804.804 kb on - strand, within RR42_RS08590at 1804.962 kb on + strand, within RR42_RS08590

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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1,802,677 + RR42_RS08570 0.85 -0.1
1,802,943 - -0.8
1,803,284 + RR42_RS08575 0.67 +1.1
1,803,589 - RR42_RS08580 0.14 +0.0
1,803,640 - RR42_RS08580 0.20 -0.4
1,803,640 - RR42_RS08580 0.20 +0.2
1,803,702 + RR42_RS08580 0.27 +0.2
1,803,702 + RR42_RS08580 0.27 +1.9
1,803,703 - RR42_RS08580 0.27 +0.8
1,803,936 + RR42_RS08580 0.53 +2.0
1,803,937 - RR42_RS08580 0.53 +0.2
1,803,937 - RR42_RS08580 0.53 +0.3
1,804,017 - RR42_RS08580 0.61 -0.8
1,804,445 - RR42_RS08585 0.24 +1.0
1,804,448 + RR42_RS08585 0.25 +0.7
1,804,490 - RR42_RS08585 0.37 -0.2
1,804,602 - RR42_RS08585 0.69 +0.6
1,804,804 - RR42_RS08590 0.13 -1.0
1,804,962 + RR42_RS08590 0.39 -0.2

Or see this region's nucleotide sequence