Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07240 and RR42_RS07245 are separated by 188 nucleotides RR42_RS07245 and RR42_RS07250 are separated by 20 nucleotides RR42_RS07250 and RR42_RS07255 are separated by 75 nucleotides RR42_RS07255 and RR42_RS07260 are separated by 97 nucleotides RR42_RS07260 and RR42_RS07265 are separated by 207 nucleotides
RR42_RS07240: RR42_RS07240 - hypothetical protein, at 1,543,788 to 1,544,042
_RS07240
RR42_RS07245: RR42_RS07245 - hypothetical protein, at 1,544,231 to 1,544,521
_RS07245
RR42_RS07250: RR42_RS07250 - hypothetical protein, at 1,544,542 to 1,544,784
_RS07250
RR42_RS07255: RR42_RS07255 - hypothetical protein, at 1,544,860 to 1,545,111
_RS07255
RR42_RS07260: RR42_RS07260 - hypothetical protein, at 1,545,209 to 1,545,577
_RS07260
RR42_RS07265: RR42_RS07265 - hypothetical protein, at 1,545,785 to 1,546,039
_RS07265
Position (kb) 1544
1545
1546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1543.943 kb on + strand, within RR42_RS07240 at 1543.944 kb on - strand, within RR42_RS07240 at 1544.041 kb on - strand at 1544.103 kb on - strand at 1544.214 kb on + strand at 1544.214 kb on + strand at 1544.219 kb on + strand at 1544.225 kb on + strand at 1544.226 kb on - strand at 1544.381 kb on - strand, within RR42_RS07245 at 1544.420 kb on - strand, within RR42_RS07245 at 1544.536 kb on + strand at 1544.783 kb on - strand at 1544.834 kb on + strand at 1544.834 kb on + strand at 1544.834 kb on + strand at 1544.834 kb on + strand at 1544.834 kb on + strand at 1544.835 kb on - strand at 1544.835 kb on - strand at 1544.894 kb on - strand, within RR42_RS07255 at 1544.894 kb on - strand, within RR42_RS07255 at 1545.097 kb on + strand at 1545.134 kb on - strand at 1545.175 kb on + strand at 1545.175 kb on + strand at 1545.175 kb on + strand at 1545.175 kb on + strand at 1545.176 kb on - strand at 1545.176 kb on - strand at 1545.176 kb on - strand at 1545.407 kb on + strand, within RR42_RS07260 at 1545.407 kb on + strand, within RR42_RS07260 at 1545.407 kb on + strand, within RR42_RS07260 at 1545.407 kb on + strand, within RR42_RS07260 at 1545.407 kb on + strand, within RR42_RS07260 at 1545.408 kb on - strand, within RR42_RS07260 at 1545.408 kb on - strand, within RR42_RS07260 at 1545.420 kb on - strand, within RR42_RS07260 at 1545.575 kb on + strand at 1545.576 kb on - strand at 1545.598 kb on + strand at 1545.637 kb on + strand at 1545.638 kb on - strand at 1545.638 kb on - strand at 1545.638 kb on - strand at 1545.638 kb on - strand at 1545.679 kb on + strand at 1545.679 kb on + strand at 1545.680 kb on - strand at 1545.878 kb on + strand, within RR42_RS07265 at 1545.878 kb on + strand, within RR42_RS07265 at 1546.057 kb on + strand at 1546.057 kb on + strand at 1546.058 kb on - strand at 1546.107 kb on + strand at 1546.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 1,543,943 + RR42_RS07240 0.61 -1.1 1,543,944 - RR42_RS07240 0.61 -0.6 1,544,041 - -0.9 1,544,103 - +0.0 1,544,214 + +0.9 1,544,214 + -0.2 1,544,219 + +0.0 1,544,225 + +0.3 1,544,226 - +2.1 1,544,381 - RR42_RS07245 0.52 -2.2 1,544,420 - RR42_RS07245 0.65 -0.3 1,544,536 + +1.1 1,544,783 - -1.4 1,544,834 + +1.8 1,544,834 + +1.1 1,544,834 + +1.1 1,544,834 + +1.2 1,544,834 + +1.2 1,544,835 - -1.6 1,544,835 - +0.4 1,544,894 - RR42_RS07255 0.13 -1.2 1,544,894 - RR42_RS07255 0.13 -0.2 1,545,097 + -2.9 1,545,134 - +0.1 1,545,175 + +0.9 1,545,175 + -1.2 1,545,175 + -1.2 1,545,175 + +1.1 1,545,176 - -0.4 1,545,176 - +0.7 1,545,176 - -0.4 1,545,407 + RR42_RS07260 0.54 +2.1 1,545,407 + RR42_RS07260 0.54 -0.5 1,545,407 + RR42_RS07260 0.54 -2.2 1,545,407 + RR42_RS07260 0.54 +0.2 1,545,407 + RR42_RS07260 0.54 -0.1 1,545,408 - RR42_RS07260 0.54 -1.2 1,545,408 - RR42_RS07260 0.54 -1.2 1,545,420 - RR42_RS07260 0.57 +0.5 1,545,575 + +0.3 1,545,576 - -0.7 1,545,598 + -3.1 1,545,637 + +1.1 1,545,638 - -0.3 1,545,638 - -1.7 1,545,638 - +0.3 1,545,638 - +1.1 1,545,679 + -0.0 1,545,679 + -3.2 1,545,680 - -0.5 1,545,878 + RR42_RS07265 0.36 +1.0 1,545,878 + RR42_RS07265 0.36 -0.3 1,546,057 + +0.5 1,546,057 + -0.8 1,546,058 - +0.6 1,546,107 + +0.7 1,546,108 - -0.0
Or see this region's nucleotide sequence