Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03825 and RR42_RS03830 are separated by 7 nucleotides RR42_RS03830 and RR42_RS03835 are separated by 6 nucleotides RR42_RS03835 and RR42_RS03840 are separated by 112 nucleotides
RR42_RS03825: RR42_RS03825 - ModE family transcriptional regulator, at 844,596 to 845,399
_RS03825
RR42_RS03830: RR42_RS03830 - molybdenum ABC transporter ATPase, at 845,407 to 846,129
_RS03830
RR42_RS03835: RR42_RS03835 - molybdate ABC transporter permease, at 846,136 to 846,807
_RS03835
RR42_RS03840: RR42_RS03840 - molybdate ABC transporter substrate-binding protein, at 846,920 to 847,711
_RS03840
Position (kb) 846
847 Strain fitness (log2 ratio) -2
-1
0
1
2 at 845.436 kb on - strand at 845.599 kb on + strand, within RR42_RS03830 at 845.864 kb on + strand, within RR42_RS03830 at 845.879 kb on + strand, within RR42_RS03830 at 845.880 kb on - strand, within RR42_RS03830 at 845.880 kb on - strand, within RR42_RS03830 at 846.110 kb on - strand at 846.110 kb on - strand at 846.137 kb on + strand at 846.263 kb on + strand, within RR42_RS03835 at 846.263 kb on + strand, within RR42_RS03835 at 846.264 kb on - strand, within RR42_RS03835 at 846.264 kb on - strand, within RR42_RS03835 at 846.437 kb on - strand, within RR42_RS03835 at 846.550 kb on - strand, within RR42_RS03835 at 846.550 kb on - strand, within RR42_RS03835 at 846.624 kb on - strand, within RR42_RS03835 at 846.624 kb on - strand, within RR42_RS03835 at 846.822 kb on + strand at 846.823 kb on - strand at 846.915 kb on - strand at 846.922 kb on - strand at 846.935 kb on + strand at 847.149 kb on + strand, within RR42_RS03840 at 847.150 kb on - strand, within RR42_RS03840 at 847.237 kb on + strand, within RR42_RS03840 at 847.238 kb on - strand, within RR42_RS03840 at 847.238 kb on - strand, within RR42_RS03840 at 847.238 kb on - strand, within RR42_RS03840 at 847.240 kb on - strand, within RR42_RS03840 at 847.240 kb on - strand, within RR42_RS03840 at 847.542 kb on + strand, within RR42_RS03840 at 847.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 845,436 - -1.7 845,599 + RR42_RS03830 0.27 +0.9 845,864 + RR42_RS03830 0.63 +0.3 845,879 + RR42_RS03830 0.65 -1.4 845,880 - RR42_RS03830 0.65 -1.9 845,880 - RR42_RS03830 0.65 +1.0 846,110 - -0.3 846,110 - +1.1 846,137 + +0.5 846,263 + RR42_RS03835 0.19 +1.3 846,263 + RR42_RS03835 0.19 -2.0 846,264 - RR42_RS03835 0.19 -1.3 846,264 - RR42_RS03835 0.19 -0.0 846,437 - RR42_RS03835 0.45 -0.6 846,550 - RR42_RS03835 0.62 +0.5 846,550 - RR42_RS03835 0.62 +1.0 846,624 - RR42_RS03835 0.73 +0.7 846,624 - RR42_RS03835 0.73 -0.1 846,822 + +0.1 846,823 - +1.1 846,915 - +0.1 846,922 - +0.1 846,935 + +0.1 847,149 + RR42_RS03840 0.29 -1.1 847,150 - RR42_RS03840 0.29 -2.0 847,237 + RR42_RS03840 0.40 -0.0 847,238 - RR42_RS03840 0.40 -0.5 847,238 - RR42_RS03840 0.40 +0.8 847,238 - RR42_RS03840 0.40 -0.4 847,240 - RR42_RS03840 0.40 +1.3 847,240 - RR42_RS03840 0.40 +0.5 847,542 + RR42_RS03840 0.79 +1.8 847,774 - -1.0
Or see this region's nucleotide sequence