Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03475 and RR42_RS03480 are separated by 153 nucleotides RR42_RS03480 and RR42_RS03485 are separated by 202 nucleotides
RR42_RS03475: RR42_RS03475 - exodeoxyribonuclease VII large subunit, at 771,221 to 772,606
_RS03475
RR42_RS03480: RR42_RS03480 - superoxide dismutase, at 772,760 to 773,341
_RS03480
RR42_RS03485: RR42_RS03485 - type VI secretion protein, at 773,544 to 774,581
_RS03485
Position (kb) 771
772
773 Strain fitness (log2 ratio) -2
-1
0
1
2 at 770.257 kb on + strand at 770.258 kb on - strand at 770.319 kb on + strand at 770.526 kb on - strand at 770.534 kb on + strand at 770.534 kb on + strand at 770.588 kb on - strand at 770.612 kb on - strand at 770.624 kb on + strand at 770.770 kb on + strand at 770.946 kb on - strand at 771.058 kb on + strand at 771.058 kb on + strand at 771.137 kb on - strand at 771.174 kb on + strand at 771.174 kb on + strand at 771.175 kb on - strand at 771.175 kb on - strand at 771.175 kb on - strand at 771.259 kb on + strand at 771.259 kb on + strand at 771.260 kb on - strand at 771.324 kb on + strand at 771.334 kb on + strand at 771.334 kb on + strand at 771.335 kb on - strand at 771.335 kb on - strand at 771.335 kb on - strand at 771.335 kb on - strand at 771.402 kb on - strand, within RR42_RS03475 at 771.402 kb on - strand, within RR42_RS03475 at 771.516 kb on + strand, within RR42_RS03475 at 771.516 kb on + strand, within RR42_RS03475 at 771.516 kb on + strand, within RR42_RS03475 at 771.517 kb on - strand, within RR42_RS03475 at 771.517 kb on - strand, within RR42_RS03475 at 771.517 kb on - strand, within RR42_RS03475 at 771.517 kb on - strand, within RR42_RS03475 at 771.517 kb on - strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.525 kb on - strand, within RR42_RS03475 at 771.525 kb on - strand, within RR42_RS03475 at 771.525 kb on - strand, within RR42_RS03475 at 771.525 kb on - strand, within RR42_RS03475 at 771.525 kb on - strand, within RR42_RS03475 at 771.591 kb on - strand, within RR42_RS03475 at 771.787 kb on - strand, within RR42_RS03475 at 772.066 kb on + strand, within RR42_RS03475 at 772.066 kb on + strand, within RR42_RS03475 at 772.066 kb on + strand, within RR42_RS03475 at 772.067 kb on - strand, within RR42_RS03475 at 772.067 kb on - strand, within RR42_RS03475 at 772.463 kb on + strand, within RR42_RS03475 at 772.464 kb on - strand, within RR42_RS03475 at 772.605 kb on - strand at 772.657 kb on + strand at 772.657 kb on + strand at 772.657 kb on + strand at 772.658 kb on - strand at 772.658 kb on - strand at 772.658 kb on - strand at 772.661 kb on - strand at 772.661 kb on - strand at 773.357 kb on + strand at 773.477 kb on - strand at 773.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 770,257 + -0.3 770,258 - +0.3 770,319 + -0.3 770,526 - -2.3 770,534 + -0.5 770,534 + -0.3 770,588 - +0.5 770,612 - -0.4 770,624 + +0.7 770,770 + -0.9 770,946 - +0.5 771,058 + +0.8 771,058 + -0.3 771,137 - -0.1 771,174 + -0.9 771,174 + -0.4 771,175 - -1.4 771,175 - -1.4 771,175 - -0.7 771,259 + -0.2 771,259 + -1.5 771,260 - +0.6 771,324 + +1.6 771,334 + +2.0 771,334 + +0.0 771,335 - -1.5 771,335 - +0.7 771,335 - +0.9 771,335 - -2.1 771,402 - RR42_RS03475 0.13 +0.5 771,402 - RR42_RS03475 0.13 -0.5 771,516 + RR42_RS03475 0.21 -0.8 771,516 + RR42_RS03475 0.21 -0.2 771,516 + RR42_RS03475 0.21 +0.9 771,517 - RR42_RS03475 0.21 +0.9 771,517 - RR42_RS03475 0.21 -2.3 771,517 - RR42_RS03475 0.21 +0.2 771,517 - RR42_RS03475 0.21 -1.9 771,517 - RR42_RS03475 0.21 +0.5 771,524 + RR42_RS03475 0.22 +0.1 771,524 + RR42_RS03475 0.22 -2.1 771,524 + RR42_RS03475 0.22 +0.1 771,524 + RR42_RS03475 0.22 +0.4 771,524 + RR42_RS03475 0.22 +0.4 771,524 + RR42_RS03475 0.22 -0.2 771,525 - RR42_RS03475 0.22 -1.9 771,525 - RR42_RS03475 0.22 -0.5 771,525 - RR42_RS03475 0.22 -2.4 771,525 - RR42_RS03475 0.22 +0.3 771,525 - RR42_RS03475 0.22 -0.2 771,591 - RR42_RS03475 0.27 -0.1 771,787 - RR42_RS03475 0.41 -1.0 772,066 + RR42_RS03475 0.61 +2.4 772,066 + RR42_RS03475 0.61 +1.2 772,066 + RR42_RS03475 0.61 -1.2 772,067 - RR42_RS03475 0.61 -1.6 772,067 - RR42_RS03475 0.61 +0.6 772,463 + RR42_RS03475 0.90 +0.5 772,464 - RR42_RS03475 0.90 -0.8 772,605 - -0.4 772,657 + -1.5 772,657 + -1.0 772,657 + -0.6 772,658 - +0.8 772,658 - -0.7 772,658 - -0.4 772,661 - -1.8 772,661 - +0.3 773,357 + -1.0 773,477 - +0.4 773,499 - +0.3
Or see this region's nucleotide sequence