Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03450 and RR42_RS03455 are separated by 12 nucleotides RR42_RS03455 and RR42_RS03460 overlap by 20 nucleotides RR42_RS03460 and RR42_RS03465 are separated by 207 nucleotides RR42_RS03465 and RR42_RS03470 are separated by 6 nucleotides
RR42_RS03450: RR42_RS03450 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 766,793 to 767,602
_RS03450
RR42_RS03455: RR42_RS03455 - hypothetical protein, at 767,615 to 767,803
_RS03455
RR42_RS03460: RR42_RS03460 - tetraacyldisaccharide 4'-kinase, at 767,784 to 768,893
_RS03460
RR42_RS03465: RR42_RS03465 - biopolymer transporter ExbD, at 769,101 to 769,529
_RS03465
RR42_RS03470: RR42_RS03470 - flagellar motor protein MotA, at 769,536 to 770,156
_RS03470
Position (kb) 767
768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 768.903 kb on - strand at 768.903 kb on - strand at 769.047 kb on - strand at 769.318 kb on + strand, within RR42_RS03465 at 769.318 kb on + strand, within RR42_RS03465 at 769.319 kb on - strand, within RR42_RS03465 at 769.319 kb on - strand, within RR42_RS03465 at 769.413 kb on - strand, within RR42_RS03465 at 769.424 kb on - strand, within RR42_RS03465 at 769.534 kb on + strand at 769.535 kb on - strand at 769.535 kb on - strand at 769.603 kb on + strand, within RR42_RS03470 at 769.603 kb on + strand, within RR42_RS03470 at 769.603 kb on + strand, within RR42_RS03470 at 769.604 kb on - strand, within RR42_RS03470 at 769.604 kb on - strand, within RR42_RS03470 at 769.604 kb on - strand, within RR42_RS03470 at 769.604 kb on - strand, within RR42_RS03470 at 769.627 kb on + strand, within RR42_RS03470 at 769.628 kb on - strand, within RR42_RS03470 at 769.679 kb on + strand, within RR42_RS03470 at 769.679 kb on + strand, within RR42_RS03470 at 769.680 kb on - strand, within RR42_RS03470 at 769.680 kb on - strand, within RR42_RS03470 at 769.681 kb on + strand, within RR42_RS03470 at 769.682 kb on - strand, within RR42_RS03470 at 769.682 kb on - strand, within RR42_RS03470 at 769.682 kb on - strand, within RR42_RS03470 at 769.682 kb on - strand, within RR42_RS03470 at 769.682 kb on - strand, within RR42_RS03470
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 768,903 - -0.4 768,903 - -0.0 769,047 - +1.0 769,318 + RR42_RS03465 0.51 +0.8 769,318 + RR42_RS03465 0.51 -0.0 769,319 - RR42_RS03465 0.51 +1.3 769,319 - RR42_RS03465 0.51 +0.8 769,413 - RR42_RS03465 0.73 +0.3 769,424 - RR42_RS03465 0.75 +1.1 769,534 + -2.8 769,535 - -2.0 769,535 - +0.6 769,603 + RR42_RS03470 0.11 -1.7 769,603 + RR42_RS03470 0.11 +0.2 769,603 + RR42_RS03470 0.11 +1.3 769,604 - RR42_RS03470 0.11 +1.6 769,604 - RR42_RS03470 0.11 -3.3 769,604 - RR42_RS03470 0.11 +0.4 769,604 - RR42_RS03470 0.11 +0.5 769,627 + RR42_RS03470 0.15 -1.9 769,628 - RR42_RS03470 0.15 +0.2 769,679 + RR42_RS03470 0.23 -0.3 769,679 + RR42_RS03470 0.23 -1.5 769,680 - RR42_RS03470 0.23 +0.1 769,680 - RR42_RS03470 0.23 +0.1 769,681 + RR42_RS03470 0.23 -1.0 769,682 - RR42_RS03470 0.24 +0.2 769,682 - RR42_RS03470 0.24 +2.5 769,682 - RR42_RS03470 0.24 +1.1 769,682 - RR42_RS03470 0.24 -1.0 769,682 - RR42_RS03470 0.24 +1.6
Or see this region's nucleotide sequence