Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01195 and RR42_RS01200 are separated by 64 nucleotides RR42_RS01200 and RR42_RS01205 are separated by 29 nucleotides RR42_RS01205 and RR42_RS01210 are separated by 145 nucleotides
RR42_RS01195: RR42_RS01195 - excinuclease ATPase, at 273,798 to 274,271
_RS01195
RR42_RS01200: RR42_RS01200 - hypothetical protein, at 274,336 to 275,145
_RS01200
RR42_RS01205: RR42_RS01205 - transposase, at 275,175 to 275,579
_RS01205
RR42_RS01210: RR42_RS01210 - n-acetyl-gamma-glutamyl-phosphate reductase, at 275,725 to 276,672
_RS01210
Position (kb) 275
276 Strain fitness (log2 ratio) -2
-1
0
1
2 at 274.200 kb on + strand, within RR42_RS01195 at 274.200 kb on + strand, within RR42_RS01195 at 274.201 kb on - strand, within RR42_RS01195 at 274.224 kb on + strand at 274.305 kb on - strand at 274.305 kb on - strand at 274.305 kb on - strand at 274.305 kb on - strand at 274.305 kb on - strand at 275.617 kb on + strand at 275.617 kb on + strand at 275.703 kb on - strand at 275.703 kb on - strand at 275.710 kb on - strand at 275.718 kb on - strand at 275.966 kb on + strand, within RR42_RS01210 at 275.966 kb on + strand, within RR42_RS01210 at 275.967 kb on - strand, within RR42_RS01210 at 276.230 kb on + strand, within RR42_RS01210 at 276.399 kb on - strand, within RR42_RS01210 at 276.450 kb on + strand, within RR42_RS01210 at 276.451 kb on - strand, within RR42_RS01210
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 274,200 + RR42_RS01195 0.85 -1.7 274,200 + RR42_RS01195 0.85 +0.0 274,201 - RR42_RS01195 0.85 +1.1 274,224 + +1.8 274,305 - -0.2 274,305 - -0.7 274,305 - +0.7 274,305 - -0.8 274,305 - -0.9 275,617 + +1.1 275,617 + +0.9 275,703 - +0.4 275,703 - +0.5 275,710 - -1.9 275,718 - -0.1 275,966 + RR42_RS01210 0.25 -2.4 275,966 + RR42_RS01210 0.25 -0.3 275,967 - RR42_RS01210 0.26 +0.5 276,230 + RR42_RS01210 0.53 +0.2 276,399 - RR42_RS01210 0.71 -0.9 276,450 + RR42_RS01210 0.76 -0.9 276,451 - RR42_RS01210 0.77 +0.7
Or see this region's nucleotide sequence