Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04030

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04020 and PGA1_c04030 are separated by 126 nucleotidesPGA1_c04030 and PGA1_c04040 are separated by 62 nucleotides PGA1_c04020: PGA1_c04020 - putative branched-chain-amino-acid aminotransferase, at 387,946 to 388,812 _c04020 PGA1_c04030: PGA1_c04030 - phenylacetic acid degradation protein paaA-like protein, at 388,939 to 389,706 _c04030 PGA1_c04040: PGA1_c04040 - phenylacetic acid degradation NADH oxidoreductase PaaE, at 389,769 to 390,842 _c04040 Position (kb) 388 389 390Strain fitness (log2 ratio) -2 -1 0 1 2at 387.971 kb on + strandat 387.973 kb on - strandat 388.147 kb on - strand, within PGA1_c04020at 388.212 kb on + strand, within PGA1_c04020at 388.338 kb on + strand, within PGA1_c04020at 388.373 kb on - strand, within PGA1_c04020at 388.388 kb on - strand, within PGA1_c04020at 388.422 kb on - strand, within PGA1_c04020at 388.446 kb on + strand, within PGA1_c04020at 388.446 kb on + strand, within PGA1_c04020at 388.454 kb on - strand, within PGA1_c04020at 388.502 kb on - strand, within PGA1_c04020at 388.645 kb on - strand, within PGA1_c04020at 388.665 kb on + strand, within PGA1_c04020at 388.665 kb on + strand, within PGA1_c04020at 388.665 kb on + strand, within PGA1_c04020at 388.673 kb on - strand, within PGA1_c04020at 388.688 kb on - strand, within PGA1_c04020at 388.917 kb on - strandat 388.922 kb on - strandat 388.969 kb on - strandat 389.013 kb on + strandat 389.013 kb on + strandat 389.013 kb on + strandat 389.021 kb on - strand, within PGA1_c04030at 389.021 kb on - strand, within PGA1_c04030at 389.021 kb on - strand, within PGA1_c04030at 389.033 kb on + strand, within PGA1_c04030at 389.045 kb on + strand, within PGA1_c04030at 389.064 kb on + strand, within PGA1_c04030at 389.071 kb on + strand, within PGA1_c04030at 389.168 kb on - strand, within PGA1_c04030at 389.169 kb on - strand, within PGA1_c04030at 389.194 kb on + strand, within PGA1_c04030at 389.202 kb on - strand, within PGA1_c04030at 389.202 kb on - strand, within PGA1_c04030at 389.323 kb on - strand, within PGA1_c04030at 389.343 kb on + strand, within PGA1_c04030at 389.371 kb on + strand, within PGA1_c04030at 389.379 kb on - strand, within PGA1_c04030at 389.379 kb on - strand, within PGA1_c04030at 389.390 kb on - strand, within PGA1_c04030at 389.401 kb on - strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.408 kb on + strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.416 kb on - strand, within PGA1_c04030at 389.456 kb on + strand, within PGA1_c04030at 389.474 kb on + strand, within PGA1_c04030at 389.516 kb on + strand, within PGA1_c04030at 389.562 kb on + strand, within PGA1_c04030at 389.619 kb on - strand, within PGA1_c04030at 389.629 kb on - strand, within PGA1_c04030at 389.648 kb on - strandat 389.717 kb on + strandat 389.723 kb on - strandat 389.725 kb on - strandat 389.806 kb on + strandat 389.819 kb on - strandat 389.820 kb on + strandat 389.820 kb on + strandat 389.826 kb on + strandat 389.828 kb on - strandat 389.828 kb on - strandat 389.828 kb on - strandat 389.833 kb on - strandat 389.834 kb on - strandat 389.882 kb on - strand, within PGA1_c04040at 389.897 kb on - strand, within PGA1_c04040at 389.919 kb on + strand, within PGA1_c04040at 389.919 kb on - strand, within PGA1_c04040at 389.934 kb on + strand, within PGA1_c04040at 389.934 kb on + strand, within PGA1_c04040at 389.942 kb on - strand, within PGA1_c04040at 389.979 kb on + strand, within PGA1_c04040at 389.980 kb on + strand, within PGA1_c04040at 389.987 kb on - strand, within PGA1_c04040at 389.988 kb on - strand, within PGA1_c04040at 390.003 kb on + strand, within PGA1_c04040at 390.011 kb on - strand, within PGA1_c04040at 390.011 kb on - strand, within PGA1_c04040at 390.034 kb on + strand, within PGA1_c04040at 390.034 kb on + strand, within PGA1_c04040at 390.034 kb on + strand, within PGA1_c04040at 390.044 kb on + strand, within PGA1_c04040at 390.052 kb on - strand, within PGA1_c04040at 390.070 kb on + strand, within PGA1_c04040at 390.070 kb on + strand, within PGA1_c04040at 390.106 kb on + strand, within PGA1_c04040at 390.114 kb on - strand, within PGA1_c04040at 390.116 kb on + strand, within PGA1_c04040at 390.153 kb on + strand, within PGA1_c04040at 390.161 kb on - strand, within PGA1_c04040at 390.161 kb on - strand, within PGA1_c04040at 390.166 kb on - strand, within PGA1_c04040at 390.171 kb on + strand, within PGA1_c04040at 390.185 kb on + strand, within PGA1_c04040at 390.193 kb on - strand, within PGA1_c04040at 390.196 kb on - strand, within PGA1_c04040at 390.237 kb on - strand, within PGA1_c04040at 390.274 kb on + strand, within PGA1_c04040at 390.274 kb on + strand, within PGA1_c04040at 390.323 kb on + strand, within PGA1_c04040at 390.323 kb on + strand, within PGA1_c04040at 390.331 kb on - strand, within PGA1_c04040at 390.337 kb on + strand, within PGA1_c04040at 390.337 kb on + strand, within PGA1_c04040at 390.337 kb on + strand, within PGA1_c04040at 390.337 kb on + strand, within PGA1_c04040at 390.345 kb on - strand, within PGA1_c04040at 390.365 kb on - strand, within PGA1_c04040at 390.365 kb on - strand, within PGA1_c04040at 390.374 kb on + strand, within PGA1_c04040at 390.400 kb on + strand, within PGA1_c04040at 390.400 kb on + strand, within PGA1_c04040at 390.400 kb on + strand, within PGA1_c04040at 390.400 kb on + strand, within PGA1_c04040at 390.400 kb on + strand, within PGA1_c04040at 390.404 kb on + strand, within PGA1_c04040at 390.408 kb on - strand, within PGA1_c04040at 390.408 kb on - strand, within PGA1_c04040at 390.408 kb on - strand, within PGA1_c04040at 390.408 kb on - strand, within PGA1_c04040at 390.408 kb on - strand, within PGA1_c04040at 390.408 kb on - strand, within PGA1_c04040at 390.418 kb on - strand, within PGA1_c04040at 390.438 kb on - strand, within PGA1_c04040at 390.439 kb on + strand, within PGA1_c04040at 390.445 kb on + strand, within PGA1_c04040at 390.445 kb on + strand, within PGA1_c04040at 390.453 kb on - strand, within PGA1_c04040at 390.461 kb on + strand, within PGA1_c04040at 390.461 kb on + strand, within PGA1_c04040at 390.496 kb on + strand, within PGA1_c04040at 390.504 kb on - strand, within PGA1_c04040at 390.597 kb on + strand, within PGA1_c04040at 390.605 kb on - strand, within PGA1_c04040at 390.605 kb on - strand, within PGA1_c04040at 390.651 kb on + strand, within PGA1_c04040at 390.654 kb on - strand, within PGA1_c04040at 390.654 kb on - strand, within PGA1_c04040at 390.681 kb on + strand, within PGA1_c04040at 390.686 kb on + strand, within PGA1_c04040at 390.686 kb on + strand, within PGA1_c04040at 390.694 kb on - strand, within PGA1_c04040

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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387,971 + -1.1
387,973 - +0.5
388,147 - PGA1_c04020 0.23 +1.1
388,212 + PGA1_c04020 0.31 +0.7
388,338 + PGA1_c04020 0.45 -0.1
388,373 - PGA1_c04020 0.49 +1.0
388,388 - PGA1_c04020 0.51 +1.0
388,422 - PGA1_c04020 0.55 -0.2
388,446 + PGA1_c04020 0.58 +0.0
388,446 + PGA1_c04020 0.58 -1.0
388,454 - PGA1_c04020 0.59 +1.9
388,502 - PGA1_c04020 0.64 +0.8
388,645 - PGA1_c04020 0.81 +0.1
388,665 + PGA1_c04020 0.83 -0.7
388,665 + PGA1_c04020 0.83 +1.0
388,665 + PGA1_c04020 0.83 -0.2
388,673 - PGA1_c04020 0.84 +1.3
388,688 - PGA1_c04020 0.86 +0.7
388,917 - -0.1
388,922 - +0.1
388,969 - +0.7
389,013 + -1.9
389,013 + -1.7
389,013 + -0.7
389,021 - PGA1_c04030 0.11 +0.9
389,021 - PGA1_c04030 0.11 -0.5
389,021 - PGA1_c04030 0.11 +0.4
389,033 + PGA1_c04030 0.12 -0.6
389,045 + PGA1_c04030 0.14 -0.8
389,064 + PGA1_c04030 0.16 +0.2
389,071 + PGA1_c04030 0.17 -1.1
389,168 - PGA1_c04030 0.30 -0.7
389,169 - PGA1_c04030 0.30 -0.0
389,194 + PGA1_c04030 0.33 -0.3
389,202 - PGA1_c04030 0.34 -1.5
389,202 - PGA1_c04030 0.34 -0.4
389,323 - PGA1_c04030 0.50 +0.9
389,343 + PGA1_c04030 0.53 +1.1
389,371 + PGA1_c04030 0.56 +0.0
389,379 - PGA1_c04030 0.57 -0.0
389,379 - PGA1_c04030 0.57 +0.8
389,390 - PGA1_c04030 0.59 +0.1
389,401 - PGA1_c04030 0.60 -0.1
389,408 + PGA1_c04030 0.61 -0.2
389,408 + PGA1_c04030 0.61 +0.7
389,408 + PGA1_c04030 0.61 -0.6
389,408 + PGA1_c04030 0.61 +0.5
389,408 + PGA1_c04030 0.61 +0.3
389,408 + PGA1_c04030 0.61 -0.8
389,408 + PGA1_c04030 0.61 -0.5
389,408 + PGA1_c04030 0.61 +1.3
389,408 + PGA1_c04030 0.61 +0.5
389,408 + PGA1_c04030 0.61 +0.0
389,408 + PGA1_c04030 0.61 -1.8
389,408 + PGA1_c04030 0.61 -1.1
389,416 - PGA1_c04030 0.62 -1.9
389,416 - PGA1_c04030 0.62 -1.8
389,416 - PGA1_c04030 0.62 -1.2
389,416 - PGA1_c04030 0.62 -0.1
389,416 - PGA1_c04030 0.62 +0.3
389,416 - PGA1_c04030 0.62 -0.8
389,416 - PGA1_c04030 0.62 -0.2
389,416 - PGA1_c04030 0.62 -0.2
389,416 - PGA1_c04030 0.62 +0.2
389,416 - PGA1_c04030 0.62 -0.5
389,416 - PGA1_c04030 0.62 +0.2
389,416 - PGA1_c04030 0.62 -0.5
389,456 + PGA1_c04030 0.67 +0.2
389,474 + PGA1_c04030 0.70 +0.2
389,516 + PGA1_c04030 0.75 -1.6
389,562 + PGA1_c04030 0.81 +0.4
389,619 - PGA1_c04030 0.89 +0.6
389,629 - PGA1_c04030 0.90 -1.0
389,648 - -0.5
389,717 + +0.4
389,723 - -0.8
389,725 - -0.4
389,806 + +0.9
389,819 - +1.4
389,820 + +1.2
389,820 + +1.0
389,826 + +1.2
389,828 - +0.4
389,828 - +0.8
389,828 - +0.4
389,833 - +1.2
389,834 - -0.5
389,882 - PGA1_c04040 0.11 +0.5
389,897 - PGA1_c04040 0.12 +0.6
389,919 + PGA1_c04040 0.14 +0.7
389,919 - PGA1_c04040 0.14 +1.1
389,934 + PGA1_c04040 0.15 +1.1
389,934 + PGA1_c04040 0.15 -0.2
389,942 - PGA1_c04040 0.16 +1.2
389,979 + PGA1_c04040 0.20 +0.6
389,980 + PGA1_c04040 0.20 +0.9
389,987 - PGA1_c04040 0.20 +0.8
389,988 - PGA1_c04040 0.20 +0.3
390,003 + PGA1_c04040 0.22 +0.1
390,011 - PGA1_c04040 0.23 -0.9
390,011 - PGA1_c04040 0.23 +0.5
390,034 + PGA1_c04040 0.25 +0.3
390,034 + PGA1_c04040 0.25 +1.7
390,034 + PGA1_c04040 0.25 -0.3
390,044 + PGA1_c04040 0.26 +0.8
390,052 - PGA1_c04040 0.26 +0.6
390,070 + PGA1_c04040 0.28 +1.1
390,070 + PGA1_c04040 0.28 +0.2
390,106 + PGA1_c04040 0.31 +0.8
390,114 - PGA1_c04040 0.32 -1.4
390,116 + PGA1_c04040 0.32 +0.3
390,153 + PGA1_c04040 0.36 -0.3
390,161 - PGA1_c04040 0.36 +0.2
390,161 - PGA1_c04040 0.36 -0.4
390,166 - PGA1_c04040 0.37 +1.1
390,171 + PGA1_c04040 0.37 +1.1
390,185 + PGA1_c04040 0.39 +0.3
390,193 - PGA1_c04040 0.39 +1.5
390,196 - PGA1_c04040 0.40 +0.5
390,237 - PGA1_c04040 0.44 +0.3
390,274 + PGA1_c04040 0.47 +0.6
390,274 + PGA1_c04040 0.47 +1.1
390,323 + PGA1_c04040 0.52 -0.1
390,323 + PGA1_c04040 0.52 +0.1
390,331 - PGA1_c04040 0.52 -1.0
390,337 + PGA1_c04040 0.53 -0.0
390,337 + PGA1_c04040 0.53 +1.1
390,337 + PGA1_c04040 0.53 +0.5
390,337 + PGA1_c04040 0.53 +0.6
390,345 - PGA1_c04040 0.54 -1.7
390,365 - PGA1_c04040 0.55 +0.5
390,365 - PGA1_c04040 0.55 +0.5
390,374 + PGA1_c04040 0.56 +0.2
390,400 + PGA1_c04040 0.59 +1.0
390,400 + PGA1_c04040 0.59 +1.3
390,400 + PGA1_c04040 0.59 +0.6
390,400 + PGA1_c04040 0.59 +0.3
390,400 + PGA1_c04040 0.59 +0.5
390,404 + PGA1_c04040 0.59 +0.4
390,408 - PGA1_c04040 0.59 +1.8
390,408 - PGA1_c04040 0.59 +0.9
390,408 - PGA1_c04040 0.59 +1.1
390,408 - PGA1_c04040 0.59 +1.2
390,408 - PGA1_c04040 0.59 +0.6
390,408 - PGA1_c04040 0.59 -0.8
390,418 - PGA1_c04040 0.60 +1.7
390,438 - PGA1_c04040 0.62 +1.3
390,439 + PGA1_c04040 0.62 +0.5
390,445 + PGA1_c04040 0.63 +0.2
390,445 + PGA1_c04040 0.63 +0.4
390,453 - PGA1_c04040 0.64 +0.7
390,461 + PGA1_c04040 0.64 +0.4
390,461 + PGA1_c04040 0.64 +0.5
390,496 + PGA1_c04040 0.68 +1.6
390,504 - PGA1_c04040 0.68 +0.6
390,597 + PGA1_c04040 0.77 +0.1
390,605 - PGA1_c04040 0.78 +0.5
390,605 - PGA1_c04040 0.78 -0.6
390,651 + PGA1_c04040 0.82 +0.5
390,654 - PGA1_c04040 0.82 -0.3
390,654 - PGA1_c04040 0.82 -0.2
390,681 + PGA1_c04040 0.85 +1.1
390,686 + PGA1_c04040 0.85 +0.1
390,686 + PGA1_c04040 0.85 +0.5
390,694 - PGA1_c04040 0.86 +1.1

Or see this region's nucleotide sequence