Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26595 and BWI76_RS26600 are separated by 35 nucleotides BWI76_RS26600 and BWI76_RS26605 are separated by 101 nucleotides BWI76_RS26605 and BWI76_RS26610 are separated by 7 nucleotides
BWI76_RS26595: BWI76_RS26595 - FAD-dependent oxidoreductase, at 5,505,378 to 5,506,577
_RS26595
BWI76_RS26600: BWI76_RS26600 - hypothetical protein, at 5,506,613 to 5,506,912
_RS26600
BWI76_RS26605: BWI76_RS26605 - 16S rRNA (guanine(1516)-N(2))-methyltransferase, at 5,507,014 to 5,507,793
_RS26605
BWI76_RS26610: BWI76_RS26610 - oligopeptidase A, at 5,507,801 to 5,509,843
_RS26610
Position (kb) 5507
5508 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5506.066 kb on + strand, within BWI76_RS26595 at 5506.074 kb on - strand, within BWI76_RS26595 at 5506.167 kb on - strand, within BWI76_RS26595 at 5506.184 kb on - strand, within BWI76_RS26595 at 5506.407 kb on - strand, within BWI76_RS26595 at 5506.407 kb on - strand, within BWI76_RS26595 at 5506.644 kb on + strand, within BWI76_RS26600 at 5506.644 kb on + strand, within BWI76_RS26600 at 5506.652 kb on - strand, within BWI76_RS26600 at 5506.659 kb on + strand, within BWI76_RS26600 at 5506.700 kb on + strand, within BWI76_RS26600 at 5506.708 kb on - strand, within BWI76_RS26600 at 5506.723 kb on - strand, within BWI76_RS26600 at 5506.754 kb on - strand, within BWI76_RS26600 at 5506.820 kb on - strand, within BWI76_RS26600 at 5506.877 kb on + strand, within BWI76_RS26600 at 5506.877 kb on + strand, within BWI76_RS26600 at 5506.885 kb on - strand at 5506.919 kb on - strand at 5507.148 kb on - strand, within BWI76_RS26605 at 5507.185 kb on - strand, within BWI76_RS26605 at 5507.285 kb on + strand, within BWI76_RS26605 at 5507.290 kb on + strand, within BWI76_RS26605 at 5507.307 kb on + strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.339 kb on - strand, within BWI76_RS26605 at 5507.390 kb on + strand, within BWI76_RS26605 at 5507.406 kb on + strand, within BWI76_RS26605 at 5507.464 kb on + strand, within BWI76_RS26605 at 5507.739 kb on + strand at 5507.814 kb on - strand at 5508.144 kb on + strand, within BWI76_RS26610 at 5508.147 kb on - strand, within BWI76_RS26610 at 5508.160 kb on - strand, within BWI76_RS26610 at 5508.372 kb on - strand, within BWI76_RS26610 at 5508.404 kb on + strand, within BWI76_RS26610 at 5508.424 kb on - strand, within BWI76_RS26610 at 5508.480 kb on - strand, within BWI76_RS26610 at 5508.509 kb on + strand at 5508.590 kb on - strand, within BWI76_RS26610 at 5508.729 kb on + strand, within BWI76_RS26610 at 5508.788 kb on - strand, within BWI76_RS26610
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,506,066 + BWI76_RS26595 0.57 +0.5 5,506,074 - BWI76_RS26595 0.58 -1.1 5,506,167 - BWI76_RS26595 0.66 -0.4 5,506,184 - BWI76_RS26595 0.67 +1.2 5,506,407 - BWI76_RS26595 0.86 +1.0 5,506,407 - BWI76_RS26595 0.86 +0.1 5,506,644 + BWI76_RS26600 0.10 -2.0 5,506,644 + BWI76_RS26600 0.10 +1.9 5,506,652 - BWI76_RS26600 0.13 +0.1 5,506,659 + BWI76_RS26600 0.15 +0.0 5,506,700 + BWI76_RS26600 0.29 -0.5 5,506,708 - BWI76_RS26600 0.32 +0.5 5,506,723 - BWI76_RS26600 0.37 -1.0 5,506,754 - BWI76_RS26600 0.47 +0.4 5,506,820 - BWI76_RS26600 0.69 -2.6 5,506,877 + BWI76_RS26600 0.88 +0.6 5,506,877 + BWI76_RS26600 0.88 -1.0 5,506,885 - +0.0 5,506,919 - +0.8 5,507,148 - BWI76_RS26605 0.17 -1.4 5,507,185 - BWI76_RS26605 0.22 -0.6 5,507,285 + BWI76_RS26605 0.35 -1.7 5,507,290 + BWI76_RS26605 0.35 -0.2 5,507,307 + BWI76_RS26605 0.38 -2.8 5,507,315 - BWI76_RS26605 0.39 -0.8 5,507,315 - BWI76_RS26605 0.39 +2.8 5,507,315 - BWI76_RS26605 0.39 -4.1 5,507,339 - BWI76_RS26605 0.42 -1.6 5,507,390 + BWI76_RS26605 0.48 +0.4 5,507,406 + BWI76_RS26605 0.50 -1.0 5,507,464 + BWI76_RS26605 0.58 -1.2 5,507,739 + -0.8 5,507,814 - +0.7 5,508,144 + BWI76_RS26610 0.17 -2.7 5,508,147 - BWI76_RS26610 0.17 +0.3 5,508,160 - BWI76_RS26610 0.18 -0.1 5,508,372 - BWI76_RS26610 0.28 -1.0 5,508,404 + BWI76_RS26610 0.30 +0.4 5,508,424 - BWI76_RS26610 0.30 -0.9 5,508,480 - BWI76_RS26610 0.33 -0.5 5,508,509 + -0.3 5,508,590 - BWI76_RS26610 0.39 -0.2 5,508,729 + BWI76_RS26610 0.45 +0.2 5,508,788 - BWI76_RS26610 0.48 -0.8
Or see this region's nucleotide sequence