Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26195 and BWI76_RS26200 are separated by 15 nucleotides BWI76_RS26200 and BWI76_RS26205 overlap by 1 nucleotides
BWI76_RS26195: BWI76_RS26195 - glycogen phosphorylase, at 5,416,992 to 5,419,439
_RS26195
BWI76_RS26200: BWI76_RS26200 - starch synthase, at 5,419,455 to 5,420,888
_RS26200
BWI76_RS26205: BWI76_RS26205 - glucose-1-phosphate adenylyltransferase, at 5,420,888 to 5,422,183
_RS26205
Position (kb)
5419
5420
5421 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5418.520 kb on + strand, within BWI76_RS26195 at 5418.538 kb on - strand, within BWI76_RS26195 at 5418.560 kb on - strand, within BWI76_RS26195 at 5418.560 kb on - strand, within BWI76_RS26195 at 5418.684 kb on + strand, within BWI76_RS26195 at 5418.738 kb on + strand, within BWI76_RS26195 at 5418.757 kb on - strand, within BWI76_RS26195 at 5419.143 kb on + strand, within BWI76_RS26195 at 5419.187 kb on + strand, within BWI76_RS26195 at 5419.195 kb on - strand at 5419.272 kb on + strand at 5419.304 kb on + strand at 5419.378 kb on + strand at 5419.408 kb on - strand at 5420.112 kb on - strand, within BWI76_RS26200 at 5420.273 kb on - strand, within BWI76_RS26200 at 5420.275 kb on + strand, within BWI76_RS26200 at 5420.280 kb on + strand, within BWI76_RS26200 at 5420.283 kb on - strand, within BWI76_RS26200 at 5420.578 kb on + strand, within BWI76_RS26200 at 5420.670 kb on - strand, within BWI76_RS26200 at 5420.724 kb on - strand, within BWI76_RS26200 at 5420.852 kb on + strand at 5420.869 kb on - strand at 5420.896 kb on + strand at 5420.904 kb on - strand at 5421.000 kb on + strand at 5421.506 kb on - strand, within BWI76_RS26205 at 5421.640 kb on + strand, within BWI76_RS26205 at 5421.648 kb on - strand, within BWI76_RS26205
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,418,520 + BWI76_RS26195 0.62 +1.9 5,418,538 - BWI76_RS26195 0.63 -1.9 5,418,560 - BWI76_RS26195 0.64 -0.6 5,418,560 - BWI76_RS26195 0.64 +0.1 5,418,684 + BWI76_RS26195 0.69 +1.2 5,418,738 + BWI76_RS26195 0.71 -1.5 5,418,757 - BWI76_RS26195 0.72 +0.8 5,419,143 + BWI76_RS26195 0.88 +0.3 5,419,187 + BWI76_RS26195 0.90 -0.2 5,419,195 - -0.7 5,419,272 + -0.1 5,419,304 + +0.1 5,419,378 + +0.9 5,419,408 - -1.0 5,420,112 - BWI76_RS26200 0.46 -1.9 5,420,273 - BWI76_RS26200 0.57 -2.3 5,420,275 + BWI76_RS26200 0.57 -1.6 5,420,280 + BWI76_RS26200 0.58 -1.2 5,420,283 - BWI76_RS26200 0.58 -1.0 5,420,578 + BWI76_RS26200 0.78 -1.1 5,420,670 - BWI76_RS26200 0.85 +0.1 5,420,724 - BWI76_RS26200 0.88 +1.0 5,420,852 + -0.8 5,420,869 - -0.6 5,420,896 + +0.9 5,420,904 - +0.7 5,421,000 + -1.0 5,421,506 - BWI76_RS26205 0.48 +0.1 5,421,640 + BWI76_RS26205 0.58 -0.3 5,421,648 - BWI76_RS26205 0.59 -0.9
Or see this region's nucleotide sequence