Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25500 and BWI76_RS25505 are separated by 305 nucleotides BWI76_RS25505 and BWI76_RS25510 are separated by 219 nucleotides
BWI76_RS25500: BWI76_RS25500 - rod shape-determining protein, at 5,300,504 to 5,301,547
_RS25500
BWI76_RS25505: BWI76_RS25505 - RNase E specificity factor CsrD, at 5,301,853 to 5,303,793
_RS25505
BWI76_RS25510: BWI76_RS25510 - oxidoreductase, at 5,304,013 to 5,304,987
_RS25510
Position (kb) 5301
5302
5303
5304 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5301.849 kb on - strand at 5302.026 kb on - strand at 5302.031 kb on - strand at 5302.148 kb on - strand, within BWI76_RS25505 at 5302.267 kb on + strand, within BWI76_RS25505 at 5302.590 kb on + strand, within BWI76_RS25505 at 5302.634 kb on - strand, within BWI76_RS25505 at 5302.810 kb on - strand, within BWI76_RS25505 at 5302.946 kb on + strand, within BWI76_RS25505 at 5302.946 kb on + strand, within BWI76_RS25505 at 5303.224 kb on + strand, within BWI76_RS25505 at 5303.232 kb on - strand, within BWI76_RS25505 at 5303.386 kb on + strand, within BWI76_RS25505 at 5303.423 kb on + strand, within BWI76_RS25505 at 5303.530 kb on + strand, within BWI76_RS25505 at 5303.538 kb on - strand, within BWI76_RS25505 at 5303.538 kb on - strand at 5303.624 kb on - strand at 5303.899 kb on + strand at 5303.969 kb on - strand at 5303.996 kb on + strand at 5304.112 kb on + strand, within BWI76_RS25510 at 5304.139 kb on - strand, within BWI76_RS25510 at 5304.248 kb on - strand, within BWI76_RS25510 at 5304.364 kb on - strand, within BWI76_RS25510 at 5304.468 kb on - strand, within BWI76_RS25510 at 5304.756 kb on + strand, within BWI76_RS25510
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,301,849 - +0.7 5,302,026 - -1.4 5,302,031 - -2.7 5,302,148 - BWI76_RS25505 0.15 -3.3 5,302,267 + BWI76_RS25505 0.21 -2.6 5,302,590 + BWI76_RS25505 0.38 -0.3 5,302,634 - BWI76_RS25505 0.40 -1.2 5,302,810 - BWI76_RS25505 0.49 -0.4 5,302,946 + BWI76_RS25505 0.56 -1.4 5,302,946 + BWI76_RS25505 0.56 -1.4 5,303,224 + BWI76_RS25505 0.71 -1.8 5,303,232 - BWI76_RS25505 0.71 -1.5 5,303,386 + BWI76_RS25505 0.79 -2.7 5,303,423 + BWI76_RS25505 0.81 -0.9 5,303,530 + BWI76_RS25505 0.86 -1.5 5,303,538 - BWI76_RS25505 0.87 -0.6 5,303,538 - +0.3 5,303,624 - -0.4 5,303,899 + -1.0 5,303,969 - +0.9 5,303,996 + -0.7 5,304,112 + BWI76_RS25510 0.10 +0.4 5,304,139 - BWI76_RS25510 0.13 +0.5 5,304,248 - BWI76_RS25510 0.24 +0.6 5,304,364 - BWI76_RS25510 0.36 -0.0 5,304,468 - BWI76_RS25510 0.47 +0.4 5,304,756 + BWI76_RS25510 0.76 +0.9
Or see this region's nucleotide sequence