Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24240

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24235 and BWI76_RS24240 are separated by 117 nucleotidesBWI76_RS24240 and BWI76_RS24245 overlap by 59 nucleotides BWI76_RS24235: BWI76_RS24235 - Branched-chain-amino-acid transaminase (EC 2.6.1.42) (from data), at 5,050,849 to 5,052,030 _RS24235 BWI76_RS24240: BWI76_RS24240 - hypothetical protein, at 5,052,148 to 5,052,354 _RS24240 BWI76_RS24245: BWI76_RS24245 - bifunctional glutathionylspermidine amidase/glutathionylspermidine synthase, at 5,052,296 to 5,054,167 _RS24245 Position (kb) 5052 5053Strain fitness (log2 ratio) -2 -1 0 1at 5051.542 kb on - strand, within BWI76_RS24235at 5051.806 kb on - strand, within BWI76_RS24235at 5051.860 kb on + strand, within BWI76_RS24235at 5051.869 kb on + strand, within BWI76_RS24235at 5051.869 kb on - strand, within BWI76_RS24235at 5051.892 kb on - strand, within BWI76_RS24235at 5051.947 kb on + strandat 5051.959 kb on - strandat 5051.970 kb on - strandat 5051.987 kb on + strandat 5052.194 kb on + strand, within BWI76_RS24240at 5052.414 kb on + strandat 5052.453 kb on + strandat 5052.818 kb on - strand, within BWI76_RS24245at 5052.977 kb on - strand, within BWI76_RS24245at 5053.002 kb on + strand, within BWI76_RS24245at 5053.021 kb on + strand, within BWI76_RS24245at 5053.088 kb on + strand, within BWI76_RS24245

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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5,051,542 - BWI76_RS24235 0.59 -2.0
5,051,806 - BWI76_RS24235 0.81 +0.1
5,051,860 + BWI76_RS24235 0.86 -0.1
5,051,869 + BWI76_RS24235 0.86 -2.0
5,051,869 - BWI76_RS24235 0.86 -0.3
5,051,892 - BWI76_RS24235 0.88 -0.5
5,051,947 + +0.6
5,051,959 - -0.0
5,051,970 - +0.1
5,051,987 + -1.2
5,052,194 + BWI76_RS24240 0.22 -0.8
5,052,414 + +0.4
5,052,453 + -0.7
5,052,818 - BWI76_RS24245 0.28 +1.6
5,052,977 - BWI76_RS24245 0.36 +0.5
5,053,002 + BWI76_RS24245 0.38 -0.4
5,053,021 + BWI76_RS24245 0.39 +0.3
5,053,088 + BWI76_RS24245 0.42 -0.1

Or see this region's nucleotide sequence