Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16230

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16225 and BWI76_RS16230 are separated by 36 nucleotidesBWI76_RS16230 and BWI76_RS16235 overlap by 4 nucleotides BWI76_RS16225: BWI76_RS16225 - arginine:ornithine antiporter, at 3,365,468 to 3,366,850 _RS16225 BWI76_RS16230: BWI76_RS16230 - dihydromonapterin reductase, at 3,366,887 to 3,367,612 _RS16230 BWI76_RS16235: BWI76_RS16235 - membrane protein, at 3,367,609 to 3,367,944 _RS16235 Position (kb) 3366 3367 3368Strain fitness (log2 ratio) -2 -1 0 1at 3365.958 kb on - strand, within BWI76_RS16225at 3366.062 kb on - strand, within BWI76_RS16225at 3366.087 kb on - strand, within BWI76_RS16225at 3366.160 kb on - strand, within BWI76_RS16225at 3366.356 kb on + strand, within BWI76_RS16225at 3366.356 kb on + strand, within BWI76_RS16225at 3366.552 kb on + strand, within BWI76_RS16225at 3367.111 kb on + strand, within BWI76_RS16230at 3367.342 kb on - strand, within BWI76_RS16230at 3367.527 kb on + strandat 3367.557 kb on - strandat 3367.647 kb on + strand, within BWI76_RS16235at 3367.654 kb on + strand, within BWI76_RS16235at 3367.816 kb on - strand, within BWI76_RS16235

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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3,365,958 - BWI76_RS16225 0.35 -1.8
3,366,062 - BWI76_RS16225 0.43 +0.5
3,366,087 - BWI76_RS16225 0.45 -0.1
3,366,160 - BWI76_RS16225 0.50 +0.6
3,366,356 + BWI76_RS16225 0.64 +0.3
3,366,356 + BWI76_RS16225 0.64 +0.1
3,366,552 + BWI76_RS16225 0.78 +0.6
3,367,111 + BWI76_RS16230 0.31 -1.5
3,367,342 - BWI76_RS16230 0.63 -1.2
3,367,527 + +1.2
3,367,557 - -1.1
3,367,647 + BWI76_RS16235 0.11 -1.1
3,367,654 + BWI76_RS16235 0.13 -1.6
3,367,816 - BWI76_RS16235 0.62 -1.5

Or see this region's nucleotide sequence