Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14800 and BWI76_RS14805 are separated by 302 nucleotides BWI76_RS14805 and BWI76_RS14810 are separated by 4 nucleotides BWI76_RS14810 and BWI76_RS14815 are separated by 21 nucleotides
BWI76_RS14800: BWI76_RS14800 - non-heme chloroperoxidase, at 3,102,519 to 3,103,355
_RS14800
BWI76_RS14805: BWI76_RS14805 - hypothetical protein, at 3,103,658 to 3,104,092
_RS14805
BWI76_RS14810: BWI76_RS14810 - carboxymuconolactone decarboxylase, at 3,104,097 to 3,104,897
_RS14810
BWI76_RS14815: BWI76_RS14815 - MdaB protein, at 3,104,919 to 3,105,515
_RS14815
Position (kb)
3103
3104
3105 Strain fitness (log2 ratio)
-2
-1
0
1 at 3102.832 kb on - strand, within BWI76_RS14800 at 3102.995 kb on - strand, within BWI76_RS14800 at 3103.092 kb on - strand, within BWI76_RS14800 at 3103.173 kb on + strand, within BWI76_RS14800 at 3103.295 kb on + strand at 3103.430 kb on + strand at 3103.595 kb on - strand at 3103.841 kb on + strand, within BWI76_RS14805 at 3103.955 kb on + strand, within BWI76_RS14805 at 3104.076 kb on - strand at 3104.359 kb on + strand, within BWI76_RS14810 at 3104.410 kb on - strand, within BWI76_RS14810 at 3104.544 kb on - strand, within BWI76_RS14810 at 3104.648 kb on + strand, within BWI76_RS14810 at 3104.656 kb on - strand, within BWI76_RS14810 at 3104.702 kb on - strand, within BWI76_RS14810 at 3104.726 kb on - strand, within BWI76_RS14810 at 3104.736 kb on - strand, within BWI76_RS14810 at 3104.790 kb on + strand, within BWI76_RS14810 at 3104.790 kb on + strand, within BWI76_RS14810 at 3105.041 kb on + strand, within BWI76_RS14815 at 3105.059 kb on + strand, within BWI76_RS14815 at 3105.067 kb on - strand, within BWI76_RS14815 at 3105.067 kb on - strand, within BWI76_RS14815
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 3,102,832 - BWI76_RS14800 0.37 -0.1 3,102,995 - BWI76_RS14800 0.57 +0.0 3,103,092 - BWI76_RS14800 0.68 +0.2 3,103,173 + BWI76_RS14800 0.78 -0.6 3,103,295 + -0.3 3,103,430 + +0.0 3,103,595 - +0.6 3,103,841 + BWI76_RS14805 0.42 -1.8 3,103,955 + BWI76_RS14805 0.68 -0.4 3,104,076 - -0.9 3,104,359 + BWI76_RS14810 0.33 -0.6 3,104,410 - BWI76_RS14810 0.39 +1.6 3,104,544 - BWI76_RS14810 0.56 +1.1 3,104,648 + BWI76_RS14810 0.69 -1.0 3,104,656 - BWI76_RS14810 0.70 -0.1 3,104,702 - BWI76_RS14810 0.76 -0.0 3,104,726 - BWI76_RS14810 0.79 +0.1 3,104,736 - BWI76_RS14810 0.80 +1.1 3,104,790 + BWI76_RS14810 0.87 +0.6 3,104,790 + BWI76_RS14810 0.87 -1.2 3,105,041 + BWI76_RS14815 0.20 -0.1 3,105,059 + BWI76_RS14815 0.23 -0.2 3,105,067 - BWI76_RS14815 0.25 -0.5 3,105,067 - BWI76_RS14815 0.25 -0.6
Or see this region's nucleotide sequence