Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09010 and BWI76_RS09015 are separated by 109 nucleotides BWI76_RS09015 and BWI76_RS09020 are separated by 151 nucleotides
BWI76_RS09010: BWI76_RS09010 - anion transporter, at 1,897,689 to 1,898,795
_RS09010
BWI76_RS09015: BWI76_RS09015 - aldo/keto reductase, at 1,898,905 to 1,899,945
_RS09015
BWI76_RS09020: BWI76_RS09020 - 6-phospho-beta-glucosidase, at 1,900,097 to 1,901,473
_RS09020
Position (kb)
1898
1899
1900 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1898.002 kb on - strand, within BWI76_RS09010 at 1898.018 kb on - strand, within BWI76_RS09010 at 1898.140 kb on + strand, within BWI76_RS09010 at 1898.222 kb on - strand, within BWI76_RS09010 at 1898.227 kb on - strand, within BWI76_RS09010 at 1898.343 kb on - strand, within BWI76_RS09010 at 1898.771 kb on - strand at 1898.865 kb on - strand at 1898.865 kb on - strand at 1898.950 kb on - strand at 1899.119 kb on - strand, within BWI76_RS09015 at 1899.242 kb on + strand, within BWI76_RS09015 at 1899.754 kb on + strand, within BWI76_RS09015 at 1899.772 kb on - strand, within BWI76_RS09015 at 1900.696 kb on + strand, within BWI76_RS09020 at 1900.717 kb on + strand, within BWI76_RS09020 at 1900.762 kb on + strand, within BWI76_RS09020 at 1900.762 kb on + strand, within BWI76_RS09020 at 1900.784 kb on - strand, within BWI76_RS09020 at 1900.784 kb on - strand, within BWI76_RS09020 at 1900.858 kb on + strand, within BWI76_RS09020
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,898,002 - BWI76_RS09010 0.28 -0.4 1,898,018 - BWI76_RS09010 0.30 -0.5 1,898,140 + BWI76_RS09010 0.41 -0.6 1,898,222 - BWI76_RS09010 0.48 +0.9 1,898,227 - BWI76_RS09010 0.49 -0.0 1,898,343 - BWI76_RS09010 0.59 -0.4 1,898,771 - +0.6 1,898,865 - +1.5 1,898,865 - -0.2 1,898,950 - +0.4 1,899,119 - BWI76_RS09015 0.21 -1.0 1,899,242 + BWI76_RS09015 0.32 -1.3 1,899,754 + BWI76_RS09015 0.82 -1.0 1,899,772 - BWI76_RS09015 0.83 -3.5 1,900,696 + BWI76_RS09020 0.44 -0.1 1,900,717 + BWI76_RS09020 0.45 +1.0 1,900,762 + BWI76_RS09020 0.48 -2.7 1,900,762 + BWI76_RS09020 0.48 -0.7 1,900,784 - BWI76_RS09020 0.50 +1.0 1,900,784 - BWI76_RS09020 0.50 +1.1 1,900,858 + BWI76_RS09020 0.55 -0.4
Or see this region's nucleotide sequence