Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09015

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS09010 and BWI76_RS09015 are separated by 109 nucleotidesBWI76_RS09015 and BWI76_RS09020 are separated by 151 nucleotides BWI76_RS09010: BWI76_RS09010 - anion transporter, at 1,897,689 to 1,898,795 _RS09010 BWI76_RS09015: BWI76_RS09015 - aldo/keto reductase, at 1,898,905 to 1,899,945 _RS09015 BWI76_RS09020: BWI76_RS09020 - 6-phospho-beta-glucosidase, at 1,900,097 to 1,901,473 _RS09020 Position (kb) 1898 1899 1900Strain fitness (log2 ratio) -3 -2 -1 0 1at 1898.002 kb on - strand, within BWI76_RS09010at 1898.018 kb on - strand, within BWI76_RS09010at 1898.140 kb on + strand, within BWI76_RS09010at 1898.222 kb on - strand, within BWI76_RS09010at 1898.227 kb on - strand, within BWI76_RS09010at 1898.343 kb on - strand, within BWI76_RS09010at 1898.771 kb on - strandat 1898.865 kb on - strandat 1898.865 kb on - strandat 1898.950 kb on - strandat 1899.119 kb on - strand, within BWI76_RS09015at 1899.242 kb on + strand, within BWI76_RS09015at 1899.754 kb on + strand, within BWI76_RS09015at 1899.772 kb on - strand, within BWI76_RS09015at 1900.696 kb on + strand, within BWI76_RS09020at 1900.717 kb on + strand, within BWI76_RS09020at 1900.762 kb on + strand, within BWI76_RS09020at 1900.762 kb on + strand, within BWI76_RS09020at 1900.784 kb on - strand, within BWI76_RS09020at 1900.784 kb on - strand, within BWI76_RS09020at 1900.858 kb on + strand, within BWI76_RS09020

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
remove
1,898,002 - BWI76_RS09010 0.28 -0.4
1,898,018 - BWI76_RS09010 0.30 -0.5
1,898,140 + BWI76_RS09010 0.41 -0.6
1,898,222 - BWI76_RS09010 0.48 +0.9
1,898,227 - BWI76_RS09010 0.49 -0.0
1,898,343 - BWI76_RS09010 0.59 -0.4
1,898,771 - +0.6
1,898,865 - +1.5
1,898,865 - -0.2
1,898,950 - +0.4
1,899,119 - BWI76_RS09015 0.21 -1.0
1,899,242 + BWI76_RS09015 0.32 -1.3
1,899,754 + BWI76_RS09015 0.82 -1.0
1,899,772 - BWI76_RS09015 0.83 -3.5
1,900,696 + BWI76_RS09020 0.44 -0.1
1,900,717 + BWI76_RS09020 0.45 +1.0
1,900,762 + BWI76_RS09020 0.48 -2.7
1,900,762 + BWI76_RS09020 0.48 -0.7
1,900,784 - BWI76_RS09020 0.50 +1.0
1,900,784 - BWI76_RS09020 0.50 +1.1
1,900,858 + BWI76_RS09020 0.55 -0.4

Or see this region's nucleotide sequence