Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01375 and BWI76_RS01380 overlap by 1 nucleotides BWI76_RS01380 and BWI76_RS01385 are separated by 41 nucleotides
BWI76_RS01375: BWI76_RS01375 - Xaa-Pro dipeptidase, at 281,018 to 282,349
_RS01375
BWI76_RS01380: BWI76_RS01380 - YigZ family protein, at 282,349 to 282,963
_RS01380
BWI76_RS01385: BWI76_RS01385 - potassium transporter, at 283,005 to 284,456
_RS01385
Position (kb) 282
283 Strain fitness (log2 ratio) -2
-1
0
1
2 at 281.457 kb on + strand, within BWI76_RS01375 at 281.508 kb on + strand, within BWI76_RS01375 at 281.656 kb on - strand, within BWI76_RS01375 at 281.686 kb on + strand, within BWI76_RS01375 at 281.698 kb on + strand, within BWI76_RS01375 at 281.711 kb on - strand, within BWI76_RS01375 at 281.737 kb on + strand, within BWI76_RS01375 at 281.869 kb on + strand, within BWI76_RS01375 at 281.869 kb on + strand, within BWI76_RS01375 at 281.869 kb on + strand, within BWI76_RS01375 at 281.869 kb on + strand, within BWI76_RS01375 at 281.877 kb on - strand, within BWI76_RS01375 at 281.902 kb on + strand, within BWI76_RS01375 at 281.959 kb on - strand, within BWI76_RS01375 at 282.032 kb on - strand, within BWI76_RS01375 at 282.032 kb on - strand, within BWI76_RS01375 at 282.076 kb on + strand, within BWI76_RS01375 at 282.095 kb on - strand, within BWI76_RS01375 at 282.095 kb on - strand, within BWI76_RS01375 at 282.099 kb on - strand, within BWI76_RS01375 at 282.100 kb on - strand, within BWI76_RS01375 at 282.220 kb on + strand at 282.230 kb on + strand at 282.479 kb on - strand, within BWI76_RS01380 at 282.591 kb on + strand, within BWI76_RS01380 at 282.719 kb on + strand, within BWI76_RS01380 at 282.720 kb on - strand, within BWI76_RS01380 at 283.237 kb on - strand, within BWI76_RS01385 at 283.264 kb on + strand, within BWI76_RS01385 at 283.908 kb on - strand, within BWI76_RS01385 at 283.931 kb on + strand, within BWI76_RS01385
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 281,457 + BWI76_RS01375 0.33 -0.2 281,508 + BWI76_RS01375 0.37 +0.6 281,656 - BWI76_RS01375 0.48 -0.2 281,686 + BWI76_RS01375 0.50 -0.2 281,698 + BWI76_RS01375 0.51 +0.1 281,711 - BWI76_RS01375 0.52 -0.5 281,737 + BWI76_RS01375 0.54 +0.1 281,869 + BWI76_RS01375 0.64 -0.5 281,869 + BWI76_RS01375 0.64 +0.3 281,869 + BWI76_RS01375 0.64 +0.1 281,869 + BWI76_RS01375 0.64 -0.2 281,877 - BWI76_RS01375 0.64 +0.5 281,902 + BWI76_RS01375 0.66 +0.1 281,959 - BWI76_RS01375 0.71 +0.4 282,032 - BWI76_RS01375 0.76 +1.0 282,032 - BWI76_RS01375 0.76 -0.5 282,076 + BWI76_RS01375 0.79 +1.1 282,095 - BWI76_RS01375 0.81 -2.0 282,095 - BWI76_RS01375 0.81 +0.8 282,099 - BWI76_RS01375 0.81 -1.1 282,100 - BWI76_RS01375 0.81 +0.0 282,220 + -1.0 282,230 + -2.4 282,479 - BWI76_RS01380 0.21 +0.3 282,591 + BWI76_RS01380 0.39 -1.4 282,719 + BWI76_RS01380 0.60 -0.9 282,720 - BWI76_RS01380 0.60 -1.9 283,237 - BWI76_RS01385 0.16 -1.4 283,264 + BWI76_RS01385 0.18 +2.4 283,908 - BWI76_RS01385 0.62 -0.6 283,931 + BWI76_RS01385 0.64 -0.6
Or see this region's nucleotide sequence