Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2612

Experiment: MoLS4 with Spermidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2611 and DVU2612 are separated by 535 nucleotidesDVU2612 and DVU2613 are separated by 46 nucleotidesDVU2613 and DVU2614 are separated by 74 nucleotides DVU2611: DVU2611 - conserved hypothetical protein (TIGR), at 2,729,301 to 2,730,860 DVU2611 DVU2612: DVU2612 - conserved hypothetical protein (TIGR), at 2,731,396 to 2,731,785 DVU2612 DVU2613: DVU2613 - hypothetical protein (TIGR), at 2,731,832 to 2,732,398 DVU2613 DVU2614: DVU2614 - hypothetical protein (TIGR), at 2,732,473 to 2,733,090 DVU2614 Position (kb) 2731 2732Strain fitness (log2 ratio) -2 -1 0 1at 2730.412 kb on + strand, within DVU2611at 2730.452 kb on + strand, within DVU2611at 2730.473 kb on + strand, within DVU2611at 2730.481 kb on - strand, within DVU2611at 2730.519 kb on - strand, within DVU2611at 2730.613 kb on + strand, within DVU2611at 2730.621 kb on - strand, within DVU2611at 2730.651 kb on + strand, within DVU2611at 2730.651 kb on + strand, within DVU2611at 2730.746 kb on - strandat 2730.752 kb on + strandat 2730.779 kb on + strandat 2730.784 kb on + strandat 2730.790 kb on + strandat 2730.816 kb on - strandat 2730.833 kb on + strandat 2730.880 kb on + strandat 2730.899 kb on + strandat 2730.899 kb on + strandat 2730.952 kb on + strandat 2730.952 kb on + strandat 2730.960 kb on - strandat 2730.960 kb on - strandat 2730.967 kb on + strandat 2730.989 kb on - strandat 2731.009 kb on - strandat 2731.033 kb on + strandat 2731.049 kb on + strandat 2731.155 kb on - strandat 2731.311 kb on - strandat 2731.376 kb on + strandat 2731.417 kb on - strandat 2731.417 kb on - strandat 2731.463 kb on + strand, within DVU2612at 2731.519 kb on - strand, within DVU2612at 2731.533 kb on + strand, within DVU2612at 2731.710 kb on - strand, within DVU2612at 2731.822 kb on - strandat 2732.463 kb on + strandat 2732.471 kb on - strandat 2732.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Spermidine (N)
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2,730,412 + DVU2611 0.71 -0.0
2,730,452 + DVU2611 0.74 +0.0
2,730,473 + DVU2611 0.75 +0.2
2,730,481 - DVU2611 0.76 -0.3
2,730,519 - DVU2611 0.78 +0.0
2,730,613 + DVU2611 0.84 +0.0
2,730,621 - DVU2611 0.85 -0.2
2,730,651 + DVU2611 0.87 +0.4
2,730,651 + DVU2611 0.87 +0.0
2,730,746 - +0.2
2,730,752 + +0.3
2,730,779 + -0.1
2,730,784 + +0.2
2,730,790 + +1.4
2,730,816 - +0.3
2,730,833 + -0.3
2,730,880 + -0.3
2,730,899 + -0.2
2,730,899 + +0.0
2,730,952 + -0.1
2,730,952 + +0.4
2,730,960 - +0.2
2,730,960 - +0.2
2,730,967 + -1.6
2,730,989 - +0.2
2,731,009 - +0.4
2,731,033 + +0.8
2,731,049 + +1.2
2,731,155 - +0.4
2,731,311 - +0.1
2,731,376 + +0.6
2,731,417 - -1.6
2,731,417 - -2.4
2,731,463 + DVU2612 0.17 -2.2
2,731,519 - DVU2612 0.32 -2.2
2,731,533 + DVU2612 0.35 -1.4
2,731,710 - DVU2612 0.81 -0.7
2,731,822 - -0.5
2,732,463 + -0.1
2,732,471 - -0.2
2,732,506 - -1.0

Or see this region's nucleotide sequence