Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36970 and RR42_RS36975 are separated by 177 nucleotides RR42_RS36975 and RR42_RS36980 are separated by 22 nucleotides RR42_RS36980 and RR42_RS36985 are separated by 106 nucleotides
RR42_RS36970: RR42_RS36970 - RND transporter, at 3,750,136 to 3,751,581
_RS36970
RR42_RS36975: RR42_RS36975 - polar amino acid ABC transporter permease, at 3,751,759 to 3,752,394
_RS36975
RR42_RS36980: RR42_RS36980 - amino acid ABC transporter permease, at 3,752,417 to 3,753,091
_RS36980
RR42_RS36985: RR42_RS36985 - amino acid ABC transporter substrate-binding protein, at 3,753,198 to 3,754,010
_RS36985
Position (kb)
3752
3753
3754 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3751.444 kb on + strand at 3751.444 kb on + strand at 3751.445 kb on - strand at 3751.445 kb on - strand at 3751.477 kb on + strand at 3751.477 kb on + strand at 3751.540 kb on + strand at 3751.541 kb on - strand at 3751.541 kb on - strand at 3751.648 kb on + strand at 3751.648 kb on + strand at 3751.649 kb on - strand at 3751.793 kb on + strand at 3751.829 kb on + strand, within RR42_RS36975 at 3751.891 kb on - strand, within RR42_RS36975 at 3751.892 kb on + strand, within RR42_RS36975 at 3751.892 kb on + strand, within RR42_RS36975 at 3751.893 kb on - strand, within RR42_RS36975 at 3751.905 kb on + strand, within RR42_RS36975 at 3751.905 kb on + strand, within RR42_RS36975 at 3751.905 kb on + strand, within RR42_RS36975 at 3752.078 kb on + strand, within RR42_RS36975 at 3752.162 kb on + strand, within RR42_RS36975 at 3752.499 kb on + strand, within RR42_RS36980 at 3752.704 kb on + strand, within RR42_RS36980 at 3752.880 kb on + strand, within RR42_RS36980 at 3752.881 kb on - strand, within RR42_RS36980 at 3752.881 kb on - strand, within RR42_RS36980 at 3752.928 kb on + strand, within RR42_RS36980 at 3752.928 kb on + strand, within RR42_RS36980 at 3752.929 kb on - strand, within RR42_RS36980 at 3753.167 kb on + strand at 3753.183 kb on - strand at 3753.271 kb on + strand at 3753.271 kb on + strand at 3753.271 kb on + strand at 3753.272 kb on - strand at 3753.370 kb on + strand, within RR42_RS36985 at 3753.370 kb on + strand, within RR42_RS36985 at 3753.371 kb on - strand, within RR42_RS36985 at 3753.371 kb on - strand, within RR42_RS36985 at 3753.371 kb on - strand, within RR42_RS36985 at 3753.371 kb on - strand, within RR42_RS36985 at 3753.518 kb on - strand, within RR42_RS36985 at 3753.665 kb on - strand, within RR42_RS36985 at 3753.854 kb on + strand, within RR42_RS36985 at 3753.855 kb on - strand, within RR42_RS36985 at 3754.022 kb on + strand at 3754.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 3,751,444 + -2.1 3,751,444 + +1.3 3,751,445 - -0.5 3,751,445 - +0.5 3,751,477 + -0.9 3,751,477 + -0.3 3,751,540 + +0.4 3,751,541 - -0.5 3,751,541 - +0.7 3,751,648 + -2.0 3,751,648 + +0.1 3,751,649 - -2.2 3,751,793 + -1.4 3,751,829 + RR42_RS36975 0.11 -0.4 3,751,891 - RR42_RS36975 0.21 -2.2 3,751,892 + RR42_RS36975 0.21 -1.2 3,751,892 + RR42_RS36975 0.21 +0.1 3,751,893 - RR42_RS36975 0.21 -0.2 3,751,905 + RR42_RS36975 0.23 -0.0 3,751,905 + RR42_RS36975 0.23 +0.4 3,751,905 + RR42_RS36975 0.23 +1.0 3,752,078 + RR42_RS36975 0.50 -0.6 3,752,162 + RR42_RS36975 0.63 +0.3 3,752,499 + RR42_RS36980 0.12 +0.1 3,752,704 + RR42_RS36980 0.43 +0.5 3,752,880 + RR42_RS36980 0.69 -0.0 3,752,881 - RR42_RS36980 0.69 +0.2 3,752,881 - RR42_RS36980 0.69 -0.4 3,752,928 + RR42_RS36980 0.76 +2.5 3,752,928 + RR42_RS36980 0.76 -0.2 3,752,929 - RR42_RS36980 0.76 +1.0 3,753,167 + -0.3 3,753,183 - -0.1 3,753,271 + +0.4 3,753,271 + -0.9 3,753,271 + -2.1 3,753,272 - +1.1 3,753,370 + RR42_RS36985 0.21 -1.7 3,753,370 + RR42_RS36985 0.21 +0.2 3,753,371 - RR42_RS36985 0.21 -0.7 3,753,371 - RR42_RS36985 0.21 +0.3 3,753,371 - RR42_RS36985 0.21 +1.1 3,753,371 - RR42_RS36985 0.21 +0.8 3,753,518 - RR42_RS36985 0.39 -1.5 3,753,665 - RR42_RS36985 0.57 +0.6 3,753,854 + RR42_RS36985 0.81 +0.6 3,753,855 - RR42_RS36985 0.81 -0.2 3,754,022 + -0.8 3,754,023 - -0.2
Or see this region's nucleotide sequence