Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35955

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,513,671	+		RR42_RS35945	0.37	+0.3
3,514,046	+		RR42_RS35945	0.79	+0.2
3,514,046	+		RR42_RS35945	0.79	+0.1
3,514,046	+		RR42_RS35945	0.79	+1.4
3,514,047	-		RR42_RS35945	0.79	-2.9
3,514,047	-		RR42_RS35945	0.79	-0.7
3,514,132	-		RR42_RS35945	0.89	+0.3
3,514,139	+		RR42_RS35945	0.90	+0.6
3,514,140	-				-0.1
3,514,161	+				-0.3
3,514,161	+				-1.1
3,514,162	-				+0.3
3,514,224	+				-1.9
3,514,224	+				-0.9
3,514,224	+				+0.1
3,514,224	+				+0.7
3,514,224	+				+0.6
3,514,225	-				-1.3
3,514,225	-				+0.0
3,514,438	+		RR42_RS35950	0.40	-1.5
3,514,456	+		RR42_RS35950	0.46	-0.9
3,514,456	+		RR42_RS35950	0.46	-1.1
3,514,469	-		RR42_RS35950	0.50	+0.3
3,514,528	+		RR42_RS35950	0.68	+0.7
3,514,529	-		RR42_RS35950	0.68	+0.6
3,514,529	-		RR42_RS35950	0.68	-0.5
3,514,529	-		RR42_RS35950	0.68	+1.3
3,514,607	-				+0.5
3,514,774	+				-2.7
3,514,774	+				+0.7
3,514,775	-				+1.1
3,514,775	-				-3.4
3,514,927	+		RR42_RS35955	0.19	+1.1
3,515,149	-		RR42_RS35955	0.35	+0.2
3,515,544	+		RR42_RS35955	0.64	+0.5
3,515,545	-		RR42_RS35955	0.64	+0.9
3,515,993	+				+0.7
3,515,993	+				+0.9
3,515,994	-				+0.4
3,515,994	-				-0.4
3,515,997	+				+0.0
3,515,997	+				-0.3
3,515,997	+				+0.8
3,515,998	-				+0.6
3,515,998	-				-2.7
3,516,051	+				-2.5
3,516,053	+				-0.8
3,516,136	+				+2.0
3,516,136	+				+0.1
3,516,137	-				-1.1
3,516,148	+				+0.2
3,516,235	+				+0.7
3,516,235	+				+1.2
3,516,235	+				-0.7
3,516,236	-				-1.0
3,516,236	-				+1.3
3,516,251	-		RR42_RS35960	0.10	-0.5
3,516,435	+		RR42_RS35960	0.21	-0.7
3,516,435	+		RR42_RS35960	0.21	+1.7
3,516,608	+		RR42_RS35960	0.31	+0.3
3,516,609	-		RR42_RS35960	0.31	-0.2
3,516,654	+		RR42_RS35960	0.33	+0.4
3,516,655	-		RR42_RS35960	0.34	-3.3
3,516,655	-		RR42_RS35960	0.34	+0.4
3,516,655	-		RR42_RS35960	0.34	+1.2
3,516,770	+		RR42_RS35960	0.40	+0.3
3,516,771	-		RR42_RS35960	0.40	-1.3
3,516,771	-		RR42_RS35960	0.40	+3.9
3,516,813	+		RR42_RS35960	0.43	+0.5
3,516,960	+		RR42_RS35960	0.51	+0.2
3,516,961	-		RR42_RS35960	0.51	-0.8
3,516,991	-		RR42_RS35960	0.53	-0.8