Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35905

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,501,304	-		RR42_RS35895	0.62	+0.1
3,501,418	-		RR42_RS35895	0.83	-0.9
3,501,550	+				+0.2
3,501,590	+				+0.5
3,501,697	-				-2.4
3,501,697	-				+0.9
3,501,710	+				+0.8
3,501,711	-				-1.2
3,501,734	-				-1.4
3,501,734	-				-1.9
3,501,734	-				+0.3
3,501,734	-				-2.5
3,501,747	+				+0.4
3,501,747	+				-1.0
3,501,747	+				-3.0
3,501,748	-				-2.5
3,501,922	+		RR42_RS35900	0.46	-2.3
3,501,922	+		RR42_RS35900	0.46	-1.3
3,501,922	+		RR42_RS35900	0.46	-2.2
3,501,923	-		RR42_RS35900	0.46	+0.4
3,501,923	-		RR42_RS35900	0.46	-1.2
3,501,925	+		RR42_RS35900	0.47	-3.4
3,501,925	+		RR42_RS35900	0.47	-1.9
3,501,925	+		RR42_RS35900	0.47	+0.1
3,501,926	-		RR42_RS35900	0.48	-1.6
3,501,957	+		RR42_RS35900	0.62	-3.5
3,501,957	+		RR42_RS35900	0.62	-1.1
3,501,957	+		RR42_RS35900	0.62	-1.1
3,501,957	+		RR42_RS35900	0.62	-1.5
3,501,958	-		RR42_RS35900	0.62	-3.5
3,501,958	-		RR42_RS35900	0.62	-2.6
3,501,958	-		RR42_RS35900	0.62	-2.5
3,501,958	-		RR42_RS35900	0.62	-1.5
3,501,967	+		RR42_RS35900	0.66	-1.7
3,501,967	+		RR42_RS35900	0.66	-2.1
3,501,968	-		RR42_RS35900	0.67	-2.2
3,502,028	-				-1.9
3,502,028	-				-2.5
3,502,223	+				-2.9
3,502,223	+				+0.7
3,502,224	-				+0.3
3,502,486	+		RR42_RS35905	0.20	+0.5
3,502,486	+		RR42_RS35905	0.20	+1.3
3,502,487	-		RR42_RS35905	0.20	+0.5
3,502,487	-		RR42_RS35905	0.20	-2.3
3,502,487	-		RR42_RS35905	0.20	-0.1
3,502,513	+		RR42_RS35905	0.23	-0.8
3,502,513	+		RR42_RS35905	0.23	+0.9
3,502,514	-		RR42_RS35905	0.23	-2.0
3,502,699	+		RR42_RS35905	0.41	-1.5
3,502,715	+		RR42_RS35905	0.43	-0.3
3,502,715	+		RR42_RS35905	0.43	-0.4
3,502,787	-		RR42_RS35905	0.50	+2.6
3,502,816	+		RR42_RS35905	0.53	+0.2
3,502,817	-		RR42_RS35905	0.53	+0.1
3,502,817	-		RR42_RS35905	0.53	+2.0
3,502,817	-		RR42_RS35905	0.53	+0.3
3,502,939	+		RR42_RS35905	0.65	-0.0
3,502,939	+		RR42_RS35905	0.65	-1.8
3,502,940	-		RR42_RS35905	0.65	+1.1
3,502,990	+		RR42_RS35905	0.70	-0.3
3,502,991	-		RR42_RS35905	0.70	+0.4
3,502,991	-		RR42_RS35905	0.70	+0.1
3,502,991	-		RR42_RS35905	0.70	-0.8
3,502,991	-		RR42_RS35905	0.70	-1.0
3,502,991	-		RR42_RS35905	0.70	-0.5
3,503,173	+		RR42_RS35905	0.88	+0.5
3,503,174	-		RR42_RS35905	0.88	-0.3
3,503,189	-		RR42_RS35905	0.89	+0.7
3,503,189	-		RR42_RS35905	0.89	-1.1
3,503,311	+				-0.2
3,503,312	-				-1.7
3,503,322	-				-0.1
3,503,362	+				+0.6
3,503,370	-				-0.2
3,503,370	-				-0.0
3,503,425	-				-2.3
3,503,463	+				-1.6
3,503,463	+				-0.2
3,503,463	+				+0.9
3,503,463	+				-0.0
3,503,463	+				-1.1
3,503,463	+				+1.3
3,503,463	+				+0.8
3,503,464	-				+0.5
3,503,464	-				-0.2
3,503,464	-				+0.3
3,503,464	-				+2.1
3,503,464	-				+0.9
3,503,464	-				+0.3
3,503,727	+		RR42_RS35910	0.42	-0.6
3,503,727	+		RR42_RS35910	0.42	+0.2
3,503,728	-		RR42_RS35910	0.42	+0.8
3,503,728	-		RR42_RS35910	0.42	+0.0
3,503,728	-		RR42_RS35910	0.42	-0.6
3,503,862	+		RR42_RS35910	0.60	+0.5
3,503,862	+		RR42_RS35910	0.60	-0.0
3,503,862	+		RR42_RS35910	0.60	-0.8
3,503,862	+		RR42_RS35910	0.60	-2.2
3,503,863	-		RR42_RS35910	0.60	-0.4
3,503,863	-		RR42_RS35910	0.60	-0.1
3,503,863	-		RR42_RS35910	0.60	+0.1
3,504,046	-		RR42_RS35910	0.85	-0.9
3,504,046	-		RR42_RS35910	0.85	+0.3
3,504,046	-		RR42_RS35910	0.85	-2.3
3,504,046	-		RR42_RS35910	0.85	-1.2
3,504,159	+				-2.4
3,504,159	+				+1.2
3,504,160	-				-0.7
3,504,160	-				+0.3
3,504,160	-				-1.3
3,504,160	-				+1.7
3,504,287	+				+0.9