Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35435

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,401,594	-		RR42_RS35430	0.18	+0.3
3,401,594	-		RR42_RS35430	0.18	-0.8
3,401,622	+		RR42_RS35430	0.25	-0.4
3,401,623	-		RR42_RS35430	0.25	-2.8
3,401,623	-		RR42_RS35430	0.25	-1.1
3,401,623	-		RR42_RS35430	0.25	+1.0
3,401,625	+		RR42_RS35430	0.26	+1.5
3,401,625	+		RR42_RS35430	0.26	-0.0
3,401,626	-		RR42_RS35430	0.26	-1.9
3,401,714	+		RR42_RS35430	0.49	-1.9
3,401,714	+		RR42_RS35430	0.49	-2.5
3,401,718	+		RR42_RS35430	0.50	-0.5
3,401,719	-		RR42_RS35430	0.50	-0.3
3,401,719	-		RR42_RS35430	0.50	+0.6
3,401,764	+		RR42_RS35430	0.62	-0.0
3,401,780	+		RR42_RS35430	0.66	+0.8
3,401,780	+		RR42_RS35430	0.66	+0.5
3,401,780	+		RR42_RS35430	0.66	+0.2
3,401,780	+		RR42_RS35430	0.66	-0.8
3,401,781	-		RR42_RS35430	0.67	+0.7
3,401,781	-		RR42_RS35430	0.67	-0.5
3,401,781	-		RR42_RS35430	0.67	+0.0
3,401,831	-		RR42_RS35430	0.80	-2.4
3,401,859	-		RR42_RS35430	0.87	-1.4
3,401,859	-		RR42_RS35430	0.87	-0.6
3,401,871	+				+1.8
3,401,872	-				+0.7
3,402,155	-				+0.6
3,402,221	+				+1.0
3,402,221	+				-1.9
3,402,221	+				+0.3
3,402,221	+				-1.2
3,402,221	+				+0.4
3,402,222	-				-1.4
3,402,222	-				+2.3
3,402,222	-				+0.9
3,402,225	+				-0.8
3,402,226	-				+0.1
3,402,226	-				+0.6
3,402,326	+				+0.6
3,402,326	+				+0.1
3,402,327	-				-1.7
3,402,349	-				-0.5
3,402,381	+				-1.7
3,402,382	-				+1.3
3,402,382	-				+0.1
3,402,443	+				-0.2
3,402,443	+				-0.1
3,402,443	+				-0.3
3,402,443	+				-0.1
3,402,445	+				+0.3
3,402,445	+				-0.1
3,402,445	+				+0.0
3,402,446	-				-1.7
3,402,446	-				+2.9
3,402,446	-				-0.9
3,402,449	+				+0.2
3,402,450	-				-0.7
3,402,450	-				+0.3
3,402,450	-				+0.6
3,402,450	-				-1.8
3,402,450	-				-1.6
3,402,450	-				+1.7
3,402,564	+				-0.8
3,402,564	+				+0.7
3,402,565	-				+0.5
3,402,577	+				-1.4
3,402,578	-				+0.7
3,402,590	-				-0.6
3,402,729	-				+0.1
3,402,729	-				-0.4
3,402,748	+				+1.2
3,402,815	-		RR42_RS35435	0.14	+0.0
3,402,835	+		RR42_RS35435	0.15	+0.1
3,402,914	+		RR42_RS35435	0.20	+0.2
3,402,915	-		RR42_RS35435	0.20	-0.3
3,402,937	+		RR42_RS35435	0.21	+0.6
3,402,938	-		RR42_RS35435	0.21	+0.5
3,402,949	+		RR42_RS35435	0.22	+1.3
3,402,950	-		RR42_RS35435	0.22	-0.2
3,402,956	+		RR42_RS35435	0.22	-2.8
3,402,957	-		RR42_RS35435	0.22	+1.3
3,402,957	-		RR42_RS35435	0.22	+0.9
3,403,155	-		RR42_RS35435	0.34	+0.5
3,403,192	+		RR42_RS35435	0.36	-0.1
3,403,192	+		RR42_RS35435	0.36	+1.3
3,403,192	+		RR42_RS35435	0.36	-1.4
3,403,193	-		RR42_RS35435	0.36	-0.4
3,403,193	-		RR42_RS35435	0.36	+0.3
3,403,193	-		RR42_RS35435	0.36	+2.1
3,403,213	+		RR42_RS35435	0.37	+0.7
3,403,213	+		RR42_RS35435	0.37	-0.1
3,403,214	-		RR42_RS35435	0.38	+0.3
3,403,295	+		RR42_RS35435	0.42	-0.1
3,403,295	+		RR42_RS35435	0.42	+1.3
3,403,309	+		RR42_RS35435	0.43	-1.1
3,403,309	+		RR42_RS35435	0.43	-1.5
3,403,309	+		RR42_RS35435	0.43	+0.9
3,403,309	+		RR42_RS35435	0.43	+0.6
3,403,309	+		RR42_RS35435	0.43	-0.8
3,403,309	+		RR42_RS35435	0.43	+0.7
3,403,309	+		RR42_RS35435	0.43	+1.3
3,403,310	-		RR42_RS35435	0.43	-0.3
3,403,310	-		RR42_RS35435	0.43	+0.6
3,403,310	-		RR42_RS35435	0.43	-0.7
3,403,310	-		RR42_RS35435	0.43	+0.6
3,403,409	-		RR42_RS35435	0.49	-0.5
3,403,509	+		RR42_RS35435	0.55	+1.3
3,403,525	+		RR42_RS35435	0.56	+0.5
3,403,693	+		RR42_RS35435	0.66	-0.0
3,403,694	-		RR42_RS35435	0.66	+0.6
3,403,696	+		RR42_RS35435	0.66	-0.2
3,403,697	-		RR42_RS35435	0.66	-0.4
3,403,732	-		RR42_RS35435	0.69	-0.7
3,403,860	+		RR42_RS35435	0.76	-0.3
3,403,861	-		RR42_RS35435	0.76	-0.7
3,403,905	+		RR42_RS35435	0.79	+0.1
3,403,988	+		RR42_RS35435	0.84	-1.8
3,403,988	+		RR42_RS35435	0.84	+0.2
3,404,194	-				-3.7
3,404,260	+				+0.7
3,404,260	+				-0.7
3,404,261	-				+0.3
3,404,261	-				-0.7
3,404,261	-				+0.7
3,404,472	+		RR42_RS35440	0.24	+3.3
3,404,575	+		RR42_RS35440	0.36	-1.5
3,404,576	-		RR42_RS35440	0.36	-0.0
3,404,576	-		RR42_RS35440	0.36	+1.9
3,404,675	-		RR42_RS35440	0.47	-1.8
3,404,692	-		RR42_RS35440	0.49	-0.5
3,404,693	+		RR42_RS35440	0.49	-0.3
3,404,693	+		RR42_RS35440	0.49	+2.1
3,404,693	+		RR42_RS35440	0.49	+0.8
3,404,694	-		RR42_RS35440	0.49	-0.3
3,404,888	-		RR42_RS35440	0.72	+1.0
3,404,888	-		RR42_RS35440	0.72	+0.3
3,405,019	+		RR42_RS35440	0.87	-2.8
3,405,020	-		RR42_RS35440	0.87	-0.1
3,405,020	-		RR42_RS35440	0.87	+0.3
3,405,068	-				-1.8
3,405,076	+				-1.8
3,405,076	+				+2.1
3,405,076	+				+0.9
3,405,077	-				-1.3
3,405,077	-				+0.2
3,405,077	-				+1.2
3,405,156	+				-0.1
3,405,157	-				-0.2