Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35415

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,397,802	+		RR42_RS35405	0.81	+0.1
3,397,802	+		RR42_RS35405	0.81	+0.5
3,397,802	+		RR42_RS35405	0.81	-0.2
3,397,802	+		RR42_RS35405	0.81	-3.4
3,397,916	+		RR42_RS35405	0.87	+0.7
3,397,983	+				+0.1
3,397,983	+				+0.2
3,397,984	-				+1.6
3,398,126	+				+0.6
3,398,198	+		RR42_RS35410	0.12	-0.7
3,398,198	+		RR42_RS35410	0.12	-2.1
3,398,198	+		RR42_RS35410	0.12	-1.3
3,398,198	+		RR42_RS35410	0.12	-2.7
3,398,199	-		RR42_RS35410	0.12	+0.7
3,398,223	-		RR42_RS35410	0.19	+0.6
3,398,223	-		RR42_RS35410	0.19	+1.6
3,398,223	-		RR42_RS35410	0.19	-0.3
3,398,266	+		RR42_RS35410	0.30	-0.7
3,398,267	-		RR42_RS35410	0.30	+0.2
3,398,267	-		RR42_RS35410	0.30	-0.9
3,398,267	-		RR42_RS35410	0.30	-0.4
3,398,451	+		RR42_RS35410	0.80	+0.1
3,398,451	+		RR42_RS35410	0.80	-0.7
3,398,508	+				+0.5
3,398,508	+				+0.4
3,398,509	-				-1.3
3,398,509	-				+0.3
3,398,586	+				-1.5
3,398,586	+				-0.8
3,398,587	-				+1.3
3,398,587	-				-0.5
3,398,662	+				+1.5
3,398,662	+				-0.3
3,398,662	+				-0.7
3,398,662	+				-0.3
3,398,662	+				+0.2
3,398,663	-				-1.1
3,398,663	-				+0.1
3,398,732	+				-2.3
3,398,733	-				+0.0
3,398,760	+				+0.3
3,398,761	-				+0.2
3,398,860	+		RR42_RS35415	0.16	-0.7
3,398,861	-		RR42_RS35415	0.16	+0.3
3,398,876	-		RR42_RS35415	0.19	+0.8
3,398,876	-		RR42_RS35415	0.19	+0.6
3,398,945	+		RR42_RS35415	0.31	-2.0
3,398,945	+		RR42_RS35415	0.31	+0.9
3,398,945	+		RR42_RS35415	0.31	+0.7
3,398,945	+		RR42_RS35415	0.31	-0.9
3,398,946	-		RR42_RS35415	0.32	+1.2
3,398,946	-		RR42_RS35415	0.32	-1.3
3,398,946	-		RR42_RS35415	0.32	+0.3
3,398,946	-		RR42_RS35415	0.32	-0.1
3,399,212	+		RR42_RS35415	0.79	-2.2
3,399,213	-		RR42_RS35415	0.79	+0.1
3,399,255	-		RR42_RS35415	0.87	-0.8
3,399,255	-		RR42_RS35415	0.87	-0.8
3,399,312	+				-1.9
3,399,343	+				-1.9
3,399,344	-				+1.3
3,399,352	+				+2.2
3,399,352	+				-1.1
3,399,353	-				-0.1
3,399,353	-				-2.6
3,399,353	-				-0.4
3,399,353	-				-0.4
3,399,353	-				-1.4
3,399,353	-				+1.1
3,399,449	+				-1.8
3,399,450	-				+0.9
3,399,450	-				-2.1
3,399,466	+				+0.0
3,399,478	-				-0.2
3,399,558	+				+0.7
3,399,749	+		RR42_RS35420	0.15	-2.0
3,399,749	+		RR42_RS35420	0.15	-1.7
3,399,750	-		RR42_RS35420	0.15	+0.2
3,399,753	+		RR42_RS35420	0.16	-0.6
3,399,753	+		RR42_RS35420	0.16	-0.3
3,399,753	+		RR42_RS35420	0.16	-1.3
3,399,753	+		RR42_RS35420	0.16	+0.7
3,399,754	-		RR42_RS35420	0.16	+0.4
3,399,754	-		RR42_RS35420	0.16	-1.0
3,399,754	-		RR42_RS35420	0.16	-0.7
3,399,754	-		RR42_RS35420	0.16	+0.2
3,399,754	-		RR42_RS35420	0.16	-0.2
3,399,754	-		RR42_RS35420	0.16	-0.8
3,399,754	-		RR42_RS35420	0.16	+0.6
3,399,754	-		RR42_RS35420	0.16	-0.9
3,399,754	-		RR42_RS35420	0.16	+0.6
3,399,754	-		RR42_RS35420	0.16	+0.1
3,399,754	-		RR42_RS35420	0.16	-1.7
3,399,921	-		RR42_RS35420	0.42	+0.3
3,399,921	-		RR42_RS35420	0.42	-1.6
3,399,921	-		RR42_RS35420	0.42	-0.8
3,399,925	-		RR42_RS35420	0.43	+0.5
3,400,153	+		RR42_RS35420	0.78	-1.1
3,400,215	+		RR42_RS35420	0.88	-3.1
3,400,216	-		RR42_RS35420	0.88	-0.8
3,400,302	-				-1.5
3,400,316	-				+0.9