Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35085

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,322,665	-				-0.8
3,322,665	-				-1.1
3,322,674	+				+0.9
3,322,674	+				-0.1
3,322,674	+				-1.4
3,322,674	+				-0.1
3,322,675	-				-2.6
3,322,675	-				-1.2
3,322,675	-				-1.2
3,322,675	-				-2.6
3,322,675	-				-1.0
3,322,704	+				-0.3
3,322,704	+				-0.4
3,322,704	+				-1.5
3,322,705	-				-1.4
3,322,705	-				-0.6
3,322,705	-				-0.2
3,322,800	+		RR42_RS35080	0.12	-0.6
3,322,800	+		RR42_RS35080	0.12	+0.6
3,322,800	+		RR42_RS35080	0.12	-0.5
3,322,800	+		RR42_RS35080	0.12	-0.5
3,322,801	-		RR42_RS35080	0.12	-0.6
3,322,801	-		RR42_RS35080	0.12	-2.2
3,322,927	-		RR42_RS35080	0.26	+0.1
3,322,941	+		RR42_RS35080	0.28	-0.0
3,322,941	+		RR42_RS35080	0.28	-0.2
3,322,941	+		RR42_RS35080	0.28	+0.7
3,322,941	+		RR42_RS35080	0.28	-0.0
3,322,942	-		RR42_RS35080	0.28	+0.7
3,322,942	-		RR42_RS35080	0.28	+0.1
3,322,942	-		RR42_RS35080	0.28	+0.3
3,322,944	+		RR42_RS35080	0.28	+0.3
3,322,944	+		RR42_RS35080	0.28	+0.5
3,322,944	+		RR42_RS35080	0.28	+0.6
3,322,944	+		RR42_RS35080	0.28	-0.3
3,322,944	+		RR42_RS35080	0.28	-0.2
3,322,945	-		RR42_RS35080	0.28	+0.6
3,322,945	-		RR42_RS35080	0.28	-2.2
3,322,945	-		RR42_RS35080	0.28	-0.7
3,322,945	-		RR42_RS35080	0.28	-0.4
3,322,945	-		RR42_RS35080	0.28	+1.7
3,322,945	-		RR42_RS35080	0.28	-1.4
3,322,945	-		RR42_RS35080	0.28	-0.7
3,322,953	+		RR42_RS35080	0.29	-1.1
3,323,030	-		RR42_RS35080	0.37	-0.6
3,323,030	-		RR42_RS35080	0.37	-0.7
3,323,030	-		RR42_RS35080	0.37	-0.7
3,323,101	+		RR42_RS35080	0.45	-1.4
3,323,181	+		RR42_RS35080	0.54	+0.3
3,323,190	+		RR42_RS35080	0.55	-0.7
3,323,190	+		RR42_RS35080	0.55	+0.1
3,323,190	+		RR42_RS35080	0.55	+0.7
3,323,190	+		RR42_RS35080	0.55	+0.4
3,323,191	-		RR42_RS35080	0.55	+0.4
3,323,191	-		RR42_RS35080	0.55	-1.1
3,323,191	-		RR42_RS35080	0.55	-1.0
3,323,191	-		RR42_RS35080	0.55	+0.4
3,323,247	+		RR42_RS35080	0.62	-1.3
3,323,247	+		RR42_RS35080	0.62	-1.4
3,323,248	-		RR42_RS35080	0.62	-1.1
3,323,248	-		RR42_RS35080	0.62	-0.2
3,323,288	-		RR42_RS35080	0.66	-0.5
3,323,289	+		RR42_RS35080	0.66	-0.9
3,323,289	+		RR42_RS35080	0.66	+0.3
3,323,290	-		RR42_RS35080	0.67	-0.0
3,323,290	-		RR42_RS35080	0.67	-0.5
3,323,290	-		RR42_RS35080	0.67	-0.7
3,323,290	-		RR42_RS35080	0.67	-1.7
3,323,496	+		RR42_RS35080	0.90	-0.4
3,323,497	-		RR42_RS35080	0.90	-0.3
3,323,548	+				+0.4
3,323,548	+				-0.5
3,323,549	-				-0.5
3,323,587	-				-0.0
3,323,587	-				-1.6
3,323,587	-				-1.1
3,323,863	+		RR42_RS35085	0.48	+0.3
3,323,864	-		RR42_RS35085	0.48	+1.1
3,323,873	+		RR42_RS35085	0.50	-0.9
3,323,979	+		RR42_RS35085	0.72	-1.3
3,323,979	+		RR42_RS35085	0.72	+0.2
3,323,979	+		RR42_RS35085	0.72	+1.3
3,323,980	-		RR42_RS35085	0.73	-2.0
3,324,045	+		RR42_RS35085	0.87	+0.6
3,324,046	-		RR42_RS35085	0.87	+2.4
3,324,046	-		RR42_RS35085	0.87	-0.5
3,324,046	-		RR42_RS35085	0.87	+1.1
3,324,054	+		RR42_RS35085	0.89	-1.7
3,324,074	+				-1.5
3,324,074	+				-1.5
3,324,075	-				-0.5
3,324,075	-				-1.0
3,324,291	+				-0.6
3,324,291	+				+0.5
3,324,292	-				+0.3
3,324,479	+		RR42_RS35090	0.20	-1.1
3,324,480	-		RR42_RS35090	0.20	+0.7
3,324,643	+		RR42_RS35090	0.30	-1.1
3,324,643	+		RR42_RS35090	0.30	-0.9
3,324,643	+		RR42_RS35090	0.30	-2.4
3,324,643	+		RR42_RS35090	0.30	+1.3
3,324,643	+		RR42_RS35090	0.30	+0.2
3,324,643	+		RR42_RS35090	0.30	-3.0
3,324,644	-		RR42_RS35090	0.30	-1.3
3,324,644	-		RR42_RS35090	0.30	-0.5
3,324,644	-		RR42_RS35090	0.30	-0.2
3,324,644	-		RR42_RS35090	0.30	+0.0
3,324,644	-		RR42_RS35090	0.30	-0.3
3,324,644	-		RR42_RS35090	0.30	-0.6
3,324,644	-		RR42_RS35090	0.30	+1.5
3,324,644	-		RR42_RS35090	0.30	+0.3
3,324,644	-		RR42_RS35090	0.30	-0.0
3,324,644	-		RR42_RS35090	0.30	-0.3
3,324,744	+		RR42_RS35090	0.36	-1.9
3,324,744	+		RR42_RS35090	0.36	+0.4
3,324,744	+		RR42_RS35090	0.36	-1.5
3,324,744	+		RR42_RS35090	0.36	+1.0
3,324,745	-		RR42_RS35090	0.36	-0.3
3,324,745	-		RR42_RS35090	0.36	+0.3
3,324,745	-		RR42_RS35090	0.36	+0.1
3,324,745	-		RR42_RS35090	0.36	-0.2
3,324,745	-		RR42_RS35090	0.36	+0.6
3,324,745	-		RR42_RS35090	0.36	-0.7
3,324,745	-		RR42_RS35090	0.36	-0.2
3,324,750	+		RR42_RS35090	0.36	-2.5
3,324,789	+		RR42_RS35090	0.39	-0.0
3,324,789	+		RR42_RS35090	0.39	-2.0
3,324,851	+		RR42_RS35090	0.43	-0.4
3,324,885	-		RR42_RS35090	0.45	-1.4
3,325,010	-		RR42_RS35090	0.52	+1.3