Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34390

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,139,135	-		RR42_RS34385	0.77	-0.1
3,139,135	-		RR42_RS34385	0.77	-1.9
3,139,311	+				-0.5
3,139,311	+				-0.6
3,139,311	+				+0.4
3,139,312	-				-1.4
3,139,440	-				+2.0
3,139,451	-				+2.6
3,139,460	+				-0.5
3,139,460	+				+0.6
3,139,460	+				+1.9
3,139,460	+				+0.4
3,139,460	+				-0.6
3,139,460	+				+0.7
3,139,460	+				-1.2
3,139,461	-				+1.3
3,139,461	-				+2.1
3,139,461	-				+2.6
3,139,461	-				+2.4
3,139,472	+				-1.1
3,139,473	-				+0.2
3,139,620	+				-0.8
3,139,621	-				-0.8
3,139,621	-				+1.8
3,139,736	+				+0.1
3,139,736	+				+1.5
3,139,737	-				+1.8
3,139,737	-				-1.4
3,140,040	+				+0.4
3,140,040	+				+0.2
3,140,041	-				+0.7
3,140,041	-				+0.3
3,140,080	-				+0.9
3,140,100	+				+0.1
3,140,100	+				+1.3
3,140,100	+				+1.4
3,140,101	-				-1.4
3,140,101	-				+0.5
3,140,254	-		RR42_RS34390	0.13	+0.8
3,140,475	+		RR42_RS34390	0.19	+0.5
3,140,476	-		RR42_RS34390	0.20	+0.4
3,140,490	+		RR42_RS34390	0.20	+0.4
3,140,490	+		RR42_RS34390	0.20	+0.4
3,140,496	+		RR42_RS34390	0.20	-1.0
3,140,734	-		RR42_RS34390	0.27	+1.5
3,140,853	+		RR42_RS34390	0.31	+1.0
3,140,977	-		RR42_RS34390	0.35	+0.5
3,141,084	+		RR42_RS34390	0.38	+0.6
3,141,084	+		RR42_RS34390	0.38	-0.2
3,141,084	+		RR42_RS34390	0.38	+1.3
3,141,084	+		RR42_RS34390	0.38	-1.2
3,141,105	+		RR42_RS34390	0.39	+1.5
3,141,136	-		RR42_RS34390	0.39	+0.3
3,141,136	-		RR42_RS34390	0.39	-0.3
3,141,136	-		RR42_RS34390	0.39	-0.2
3,141,225	+		RR42_RS34390	0.42	+0.8
3,141,225	+		RR42_RS34390	0.42	+0.3
3,141,226	-		RR42_RS34390	0.42	-3.0
3,141,226	-		RR42_RS34390	0.42	+1.0
3,141,226	-		RR42_RS34390	0.42	-1.1
3,141,587	+		RR42_RS34390	0.53	+0.1
3,141,587	+		RR42_RS34390	0.53	+0.6
3,141,587	+		RR42_RS34390	0.53	-0.5
3,141,588	-		RR42_RS34390	0.53	+1.3
3,141,588	-		RR42_RS34390	0.53	+1.5
3,141,588	-		RR42_RS34390	0.53	+0.4
3,141,588	-		RR42_RS34390	0.53	-0.6
3,141,591	+		RR42_RS34390	0.53	-0.5
3,141,591	+		RR42_RS34390	0.53	-0.7
3,141,591	+		RR42_RS34390	0.53	-0.8
3,141,592	-		RR42_RS34390	0.53	+0.6
3,141,592	-		RR42_RS34390	0.53	+1.0
3,141,592	-		RR42_RS34390	0.53	+1.1
3,141,637	-		RR42_RS34390	0.55	-0.4
3,141,716	+		RR42_RS34390	0.57	+0.1
3,141,744	+		RR42_RS34390	0.58	+1.1
3,141,998	-		RR42_RS34390	0.66	+0.5
3,141,998	-		RR42_RS34390	0.66	-1.4
3,141,998	-		RR42_RS34390	0.66	-1.7
3,141,998	-		RR42_RS34390	0.66	-0.2
3,142,305	-		RR42_RS34390	0.75	+0.2
3,143,041	+				+0.9
3,143,042	-				+0.8
3,143,042	-				-0.8
3,143,195	-				+1.1
3,143,195	-				+0.9
3,143,401	+		RR42_RS34395	0.52	+0.2
3,143,850	-				+0.4
3,143,908	+				-1.8
3,143,921	+				+0.4
3,143,921	+				-1.2
3,143,921	+				-0.2
3,143,922	-				+0.7
3,143,922	-				-0.4
3,143,961	+				-0.6
3,143,961	+				+0.6
3,143,961	+				+0.5
3,143,961	+				+1.6
3,143,962	-				+0.4
3,143,962	-				-0.8
3,143,962	-				+0.3
3,143,962	-				-0.2
3,144,108	+		RR42_RS34400	0.17	+0.5
3,144,121	+		RR42_RS34400	0.19	+0.1
3,144,121	+		RR42_RS34400	0.19	-1.2