Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34110

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,080,994	+		RR42_RS34105	0.27	-0.4
3,080,994	+		RR42_RS34105	0.27	-1.1
3,081,090	-		RR42_RS34105	0.37	+0.5
3,081,139	+		RR42_RS34105	0.42	+0.6
3,081,239	-		RR42_RS34105	0.52	-0.5
3,081,299	+		RR42_RS34105	0.58	-0.9
3,081,299	+		RR42_RS34105	0.58	+0.7
3,081,299	+		RR42_RS34105	0.58	-0.3
3,081,300	-		RR42_RS34105	0.58	+0.7
3,081,300	-		RR42_RS34105	0.58	-3.2
3,081,303	-		RR42_RS34105	0.58	-2.7
3,081,311	+		RR42_RS34105	0.59	+0.5
3,081,312	-		RR42_RS34105	0.59	-1.6
3,081,351	+		RR42_RS34105	0.63	-2.5
3,081,399	+		RR42_RS34105	0.68	+0.0
3,081,399	+		RR42_RS34105	0.68	-2.6
3,081,400	-		RR42_RS34105	0.68	-0.8
3,081,400	-		RR42_RS34105	0.68	-3.4
3,081,476	-		RR42_RS34105	0.76	+0.6
3,081,594	+		RR42_RS34105	0.88	+0.4
3,081,595	-		RR42_RS34105	0.88	+0.6
3,081,595	-		RR42_RS34105	0.88	-1.3
3,081,595	-		RR42_RS34105	0.88	+1.2
3,081,595	-		RR42_RS34105	0.88	-0.1
3,081,597	+		RR42_RS34105	0.88	-1.0
3,081,598	-		RR42_RS34105	0.88	+0.3
3,081,598	-		RR42_RS34105	0.88	+0.3
3,081,606	+		RR42_RS34105	0.89	+0.3
3,081,606	+		RR42_RS34105	0.89	+0.5
3,081,644	+				-2.4
3,081,645	-				-1.3
3,081,732	-				-1.9
3,081,834	+				-2.1
3,081,841	+				+0.5
3,081,841	+				-1.6
3,081,890	+				-0.3
3,081,891	-				-2.1
3,081,891	-				+0.2
3,081,966	+				-0.3
3,082,043	+				-3.4
3,082,043	+				+0.2
3,082,044	-				+0.0
3,082,044	-				+0.0
3,082,044	-				+2.2
3,082,131	+		RR42_RS34110	0.15	-1.1
3,082,131	+		RR42_RS34110	0.15	+0.1
3,082,132	-		RR42_RS34110	0.15	-2.8
3,082,132	-		RR42_RS34110	0.15	-1.0
3,082,132	-		RR42_RS34110	0.15	-1.3
3,082,132	-		RR42_RS34110	0.15	+1.0
3,082,134	-		RR42_RS34110	0.15	-0.0
3,082,134	-		RR42_RS34110	0.15	+0.5
3,082,134	-		RR42_RS34110	0.15	-0.4
3,082,519	+		RR42_RS34110	0.44	-1.3
3,082,555	-		RR42_RS34110	0.46	+0.7
3,082,604	+		RR42_RS34110	0.50	+0.8
3,082,689	+		RR42_RS34110	0.56	+2.2
3,082,690	-		RR42_RS34110	0.56	+0.2
3,082,698	+		RR42_RS34110	0.57	-0.0
3,082,812	+		RR42_RS34110	0.65	+0.6
3,082,812	+		RR42_RS34110	0.65	-1.6
3,082,813	-		RR42_RS34110	0.65	-2.1
3,082,813	-		RR42_RS34110	0.65	-0.5
3,082,813	-		RR42_RS34110	0.65	-0.2
3,082,936	+		RR42_RS34110	0.74	-0.5
3,082,937	-		RR42_RS34110	0.75	-0.4
3,082,937	-		RR42_RS34110	0.75	-1.0
3,082,937	-		RR42_RS34110	0.75	+1.6
3,082,937	-		RR42_RS34110	0.75	+0.3
3,083,026	-		RR42_RS34110	0.81	+1.3
3,083,040	+		RR42_RS34110	0.82	-0.7
3,083,046	+		RR42_RS34110	0.83	+0.8
3,083,047	-		RR42_RS34110	0.83	-0.9
3,083,106	+		RR42_RS34110	0.87	+0.4
3,083,107	-		RR42_RS34110	0.87	+0.1
3,083,107	-		RR42_RS34110	0.87	+0.3
3,083,200	+				-0.4
3,083,200	+				+0.2
3,083,200	+				+0.4
3,083,200	+				+0.1
3,083,270	+				+0.0
3,083,271	-				-1.3
3,083,518	+		RR42_RS34115	0.35	-2.6
3,083,518	+		RR42_RS34115	0.35	-0.4
3,083,519	-		RR42_RS34115	0.35	+1.7
3,083,617	+		RR42_RS34115	0.84	+0.4
3,083,618	-		RR42_RS34115	0.85	+0.9
3,083,685	+				+0.2
3,083,685	+				-2.4
3,083,691	-				+0.0
3,083,743	-		RR42_RS34120	0.17	-0.1
3,083,745	-		RR42_RS34120	0.17	-2.7
3,083,745	-		RR42_RS34120	0.17	-2.0
3,083,745	-		RR42_RS34120	0.17	-1.1
3,083,785	-		RR42_RS34120	0.26	-0.8
3,083,796	+		RR42_RS34120	0.29	-0.0
3,083,797	-		RR42_RS34120	0.29	+0.3
3,083,797	-		RR42_RS34120	0.29	+0.4
3,083,851	+		RR42_RS34120	0.42	+0.3
3,083,851	+		RR42_RS34120	0.42	-0.5
3,083,851	+		RR42_RS34120	0.42	+1.0
3,083,852	-		RR42_RS34120	0.42	-0.9
3,083,852	-		RR42_RS34120	0.42	-1.6
3,083,852	-		RR42_RS34120	0.42	+0.8
3,083,852	-		RR42_RS34120	0.42	-0.6
3,083,853	-		RR42_RS34120	0.43	-0.3
3,083,981	+		RR42_RS34120	0.73	-1.0
3,083,982	-		RR42_RS34120	0.73	+0.2
3,084,099	+				+0.6
3,084,100	-				-0.2
3,084,129	-				-0.1