Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33435

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
2,918,759	-		RR42_RS33430	0.36	-1.2
2,918,881	+		RR42_RS33430	0.50	-1.1
2,918,881	+		RR42_RS33430	0.50	+0.7
2,918,881	+		RR42_RS33430	0.50	-0.8
2,919,397	+				-0.7
2,919,397	+				-1.0
2,919,669	+		RR42_RS33435	0.12	+1.8
2,919,669	+		RR42_RS33435	0.12	+0.8
2,919,670	-		RR42_RS33435	0.12	-1.6
2,919,670	-		RR42_RS33435	0.12	+2.6
2,919,777	+		RR42_RS33435	0.18	-0.0
2,919,778	-		RR42_RS33435	0.18	-0.5
2,919,891	+		RR42_RS33435	0.23	+0.7
2,919,892	-		RR42_RS33435	0.23	+0.3
2,919,892	-		RR42_RS33435	0.23	+0.1
2,919,894	+		RR42_RS33435	0.24	-1.2
2,919,894	+		RR42_RS33435	0.24	-3.3
2,919,894	+		RR42_RS33435	0.24	-0.0
2,919,894	+		RR42_RS33435	0.24	+0.4
2,919,894	+		RR42_RS33435	0.24	-1.4
2,919,894	+		RR42_RS33435	0.24	-1.9
2,919,895	-		RR42_RS33435	0.24	-0.7
2,919,895	-		RR42_RS33435	0.24	+1.2
2,919,895	-		RR42_RS33435	0.24	-0.7
2,919,933	+		RR42_RS33435	0.25	+0.1
2,920,095	+		RR42_RS33435	0.34	-1.6
2,920,095	+		RR42_RS33435	0.34	-1.7
2,920,095	+		RR42_RS33435	0.34	+2.6
2,920,095	+		RR42_RS33435	0.34	+0.9
2,920,095	+		RR42_RS33435	0.34	+0.1
2,920,095	+		RR42_RS33435	0.34	+0.6
2,920,095	+		RR42_RS33435	0.34	+1.4
2,920,095	+		RR42_RS33435	0.34	+0.6
2,920,096	-		RR42_RS33435	0.34	+0.8
2,920,096	-		RR42_RS33435	0.34	+0.4
2,920,096	-		RR42_RS33435	0.34	+0.3
2,920,096	-		RR42_RS33435	0.34	+0.4
2,920,101	+		RR42_RS33435	0.34	-0.5
2,920,101	+		RR42_RS33435	0.34	+0.6
2,920,101	+		RR42_RS33435	0.34	-0.4
2,920,101	+		RR42_RS33435	0.34	+1.2
2,920,101	+		RR42_RS33435	0.34	-0.2
2,920,102	-		RR42_RS33435	0.34	-2.2
2,920,102	-		RR42_RS33435	0.34	+0.7
2,920,102	-		RR42_RS33435	0.34	-0.4
2,920,102	-		RR42_RS33435	0.34	-0.8
2,920,296	+		RR42_RS33435	0.44	-0.6
2,920,297	-		RR42_RS33435	0.44	+0.1
2,920,297	-		RR42_RS33435	0.44	-0.5
2,920,407	+		RR42_RS33435	0.49	+2.7
2,920,407	+		RR42_RS33435	0.49	+0.9
2,920,407	+		RR42_RS33435	0.49	-0.2
2,920,407	+		RR42_RS33435	0.49	-1.0
2,920,408	-		RR42_RS33435	0.50	+0.1
2,920,408	-		RR42_RS33435	0.50	-0.3
2,920,408	-		RR42_RS33435	0.50	-0.6
2,920,408	-		RR42_RS33435	0.50	+0.7
2,920,527	+		RR42_RS33435	0.56	-1.4
2,920,527	+		RR42_RS33435	0.56	-2.4
2,920,527	+		RR42_RS33435	0.56	-1.3
2,920,527	+		RR42_RS33435	0.56	+1.1
2,920,527	+		RR42_RS33435	0.56	-1.9
2,920,527	+		RR42_RS33435	0.56	-0.8
2,920,527	+		RR42_RS33435	0.56	-0.5
2,920,527	+		RR42_RS33435	0.56	-0.6
2,920,527	+		RR42_RS33435	0.56	-0.9
2,920,527	+		RR42_RS33435	0.56	-0.7
2,920,527	+		RR42_RS33435	0.56	+1.5
2,920,528	-		RR42_RS33435	0.56	+0.9
2,920,528	-		RR42_RS33435	0.56	-0.7
2,920,528	-		RR42_RS33435	0.56	-0.9
2,920,528	-		RR42_RS33435	0.56	-0.3
2,920,528	-		RR42_RS33435	0.56	+0.8
2,920,528	-		RR42_RS33435	0.56	+1.1
2,920,528	-		RR42_RS33435	0.56	-0.4
2,920,528	-		RR42_RS33435	0.56	-2.9
2,920,533	+		RR42_RS33435	0.56	-0.2
2,920,534	-		RR42_RS33435	0.56	+0.1
2,920,534	-		RR42_RS33435	0.56	+1.1
2,920,534	-		RR42_RS33435	0.56	-2.2
2,920,647	+		RR42_RS33435	0.62	-1.2
2,920,647	+		RR42_RS33435	0.62	-0.9
2,920,651	-		RR42_RS33435	0.62	-0.3
2,920,683	+		RR42_RS33435	0.63	-0.6
2,920,692	+		RR42_RS33435	0.64	+0.3
2,920,692	+		RR42_RS33435	0.64	+1.2
2,920,704	+		RR42_RS33435	0.64	+0.3
2,920,704	+		RR42_RS33435	0.64	-0.3
2,920,705	-		RR42_RS33435	0.65	+0.1
2,920,816	-		RR42_RS33435	0.70	+0.8
2,920,816	-		RR42_RS33435	0.70	+2.3
2,920,900	+		RR42_RS33435	0.74	+0.5
2,920,962	+		RR42_RS33435	0.78	-0.5
2,920,963	-		RR42_RS33435	0.78	-0.8
2,921,071	-		RR42_RS33435	0.83	+1.6
2,921,154	+		RR42_RS33435	0.87	+0.9
2,921,154	+		RR42_RS33435	0.87	-1.7
2,921,154	+		RR42_RS33435	0.87	-0.2
2,921,155	-		RR42_RS33435	0.87	-0.4
2,921,187	+		RR42_RS33435	0.89	-2.8
2,921,187	+		RR42_RS33435	0.89	+0.0
2,921,187	+		RR42_RS33435	0.89	-1.2
2,921,188	-		RR42_RS33435	0.89	-0.6
2,921,357	+				+2.3
2,921,358	-				-0.1
2,921,370	+				+1.1
2,921,503	+				-0.9
2,921,691	+		RR42_RS33440	0.27	+0.6
2,921,861	+		RR42_RS33440	0.45	-1.4
2,921,941	-		RR42_RS33440	0.54	+0.8
2,921,941	-		RR42_RS33440	0.54	+1.1