Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS31715 and RR42_RS31720 are separated by 693 nucleotides RR42_RS31720 and RR42_RS31725 overlap by 4 nucleotides
RR42_RS31715: RR42_RS31715 - hypothetical protein, at 2,493,418 to 2,493,747
_RS31715
RR42_RS31720: RR42_RS31720 - transcriptional regulator, at 2,494,441 to 2,494,734
_RS31720
RR42_RS31725: RR42_RS31725 - regulator, at 2,494,731 to 2,496,032
_RS31725
Position (kb)
2494
2495 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2493.605 kb on + strand, within RR42_RS31715 at 2493.684 kb on + strand, within RR42_RS31715 at 2493.685 kb on - strand, within RR42_RS31715 at 2493.703 kb on + strand, within RR42_RS31715 at 2493.704 kb on - strand, within RR42_RS31715 at 2493.720 kb on - strand at 2493.720 kb on - strand at 2493.720 kb on - strand at 2493.724 kb on + strand at 2493.724 kb on + strand at 2493.724 kb on + strand at 2493.724 kb on + strand at 2493.724 kb on + strand at 2493.725 kb on - strand at 2493.725 kb on - strand at 2493.725 kb on - strand at 2493.725 kb on - strand at 2493.725 kb on - strand at 2493.725 kb on - strand at 2493.725 kb on - strand at 2493.725 kb on - strand at 2493.725 kb on - strand at 2493.754 kb on - strand at 2493.798 kb on + strand at 2493.799 kb on - strand at 2493.799 kb on - strand at 2493.799 kb on - strand at 2493.814 kb on - strand at 2493.814 kb on - strand at 2493.822 kb on + strand at 2493.822 kb on + strand at 2494.023 kb on + strand at 2494.023 kb on + strand at 2494.234 kb on + strand at 2494.369 kb on - strand at 2494.370 kb on + strand at 2494.425 kb on + strand at 2494.755 kb on + strand at 2494.945 kb on - strand, within RR42_RS31725 at 2494.945 kb on - strand, within RR42_RS31725 at 2494.971 kb on + strand, within RR42_RS31725 at 2494.972 kb on - strand, within RR42_RS31725 at 2495.355 kb on + strand, within RR42_RS31725 at 2495.355 kb on + strand, within RR42_RS31725 at 2495.355 kb on + strand, within RR42_RS31725 at 2495.356 kb on - strand, within RR42_RS31725 at 2495.356 kb on - strand, within RR42_RS31725 at 2495.356 kb on - strand, within RR42_RS31725 at 2495.356 kb on - strand, within RR42_RS31725 at 2495.559 kb on - strand, within RR42_RS31725 at 2495.559 kb on - strand, within RR42_RS31725 at 2495.565 kb on + strand, within RR42_RS31725 at 2495.583 kb on + strand, within RR42_RS31725 at 2495.719 kb on - strand, within RR42_RS31725
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 2,493,605 + RR42_RS31715 0.57 -0.9 2,493,684 + RR42_RS31715 0.81 -1.6 2,493,685 - RR42_RS31715 0.81 +1.1 2,493,703 + RR42_RS31715 0.86 +0.2 2,493,704 - RR42_RS31715 0.87 +0.7 2,493,720 - +0.7 2,493,720 - +1.7 2,493,720 - +1.0 2,493,724 + -0.6 2,493,724 + -0.5 2,493,724 + -0.7 2,493,724 + +1.8 2,493,724 + +0.9 2,493,725 - -0.5 2,493,725 - +0.2 2,493,725 - -0.0 2,493,725 - -0.4 2,493,725 - -0.4 2,493,725 - +1.1 2,493,725 - +0.1 2,493,725 - +0.3 2,493,725 - +0.7 2,493,754 - -0.9 2,493,798 + +0.8 2,493,799 - -2.9 2,493,799 - -0.2 2,493,799 - +0.1 2,493,814 - +0.0 2,493,814 - +0.3 2,493,822 + +0.1 2,493,822 + -0.6 2,494,023 + -1.7 2,494,023 + +1.5 2,494,234 + +0.6 2,494,369 - -1.6 2,494,370 + -0.3 2,494,425 + +0.7 2,494,755 + -0.1 2,494,945 - RR42_RS31725 0.16 -0.1 2,494,945 - RR42_RS31725 0.16 +0.3 2,494,971 + RR42_RS31725 0.18 -0.2 2,494,972 - RR42_RS31725 0.19 -0.6 2,495,355 + RR42_RS31725 0.48 -0.2 2,495,355 + RR42_RS31725 0.48 -1.3 2,495,355 + RR42_RS31725 0.48 +0.6 2,495,356 - RR42_RS31725 0.48 +0.2 2,495,356 - RR42_RS31725 0.48 -0.5 2,495,356 - RR42_RS31725 0.48 -0.4 2,495,356 - RR42_RS31725 0.48 +0.1 2,495,559 - RR42_RS31725 0.64 -0.3 2,495,559 - RR42_RS31725 0.64 +0.4 2,495,565 + RR42_RS31725 0.64 -0.0 2,495,583 + RR42_RS31725 0.65 -0.2 2,495,719 - RR42_RS31725 0.76 -0.2
Or see this region's nucleotide sequence