Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS30945 and RR42_RS30950 are separated by 14 nucleotides RR42_RS30950 and RR42_RS30955 are separated by 179 nucleotides
RR42_RS30945: RR42_RS30945 - cytochrome C peroxidase, at 2,324,672 to 2,325,958
_RS30945
RR42_RS30950: RR42_RS30950 - cation transporter, at 2,325,973 to 2,329,098
_RS30950
RR42_RS30955: RR42_RS30955 - histidine kinase, at 2,329,278 to 2,330,720
_RS30955
Position (kb)
2325
2326
2327
2328
2329
2330 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2325.070 kb on - strand, within RR42_RS30945 at 2325.070 kb on - strand, within RR42_RS30945 at 2325.269 kb on + strand, within RR42_RS30945 at 2325.270 kb on - strand, within RR42_RS30945 at 2325.605 kb on + strand, within RR42_RS30945 at 2325.606 kb on - strand, within RR42_RS30945 at 2325.891 kb on - strand at 2325.904 kb on + strand at 2325.905 kb on - strand at 2325.956 kb on + strand at 2326.057 kb on + strand at 2326.057 kb on + strand at 2326.057 kb on + strand at 2326.057 kb on + strand at 2326.057 kb on + strand at 2326.058 kb on - strand at 2326.058 kb on - strand at 2326.058 kb on - strand at 2326.058 kb on - strand at 2326.063 kb on + strand at 2326.064 kb on - strand at 2326.064 kb on - strand at 2326.064 kb on - strand at 2326.064 kb on - strand at 2326.235 kb on - strand at 2326.278 kb on + strand at 2326.278 kb on + strand at 2326.279 kb on - strand at 2326.282 kb on + strand at 2326.282 kb on + strand at 2326.282 kb on + strand at 2326.282 kb on + strand at 2326.283 kb on - strand at 2326.283 kb on - strand at 2326.283 kb on - strand at 2326.390 kb on + strand, within RR42_RS30950 at 2326.391 kb on - strand, within RR42_RS30950 at 2326.391 kb on - strand, within RR42_RS30950 at 2326.391 kb on - strand, within RR42_RS30950 at 2326.391 kb on - strand, within RR42_RS30950 at 2326.444 kb on + strand, within RR42_RS30950 at 2326.444 kb on + strand, within RR42_RS30950 at 2326.445 kb on - strand, within RR42_RS30950 at 2326.553 kb on - strand, within RR42_RS30950 at 2326.588 kb on + strand, within RR42_RS30950 at 2326.654 kb on + strand, within RR42_RS30950 at 2326.654 kb on + strand, within RR42_RS30950 at 2326.654 kb on + strand, within RR42_RS30950 at 2326.679 kb on - strand, within RR42_RS30950 at 2326.961 kb on - strand, within RR42_RS30950 at 2326.961 kb on - strand, within RR42_RS30950 at 2327.115 kb on + strand, within RR42_RS30950 at 2327.115 kb on + strand, within RR42_RS30950 at 2327.116 kb on - strand, within RR42_RS30950 at 2327.116 kb on - strand, within RR42_RS30950 at 2327.138 kb on - strand, within RR42_RS30950 at 2327.138 kb on - strand, within RR42_RS30950 at 2327.138 kb on - strand, within RR42_RS30950 at 2327.359 kb on + strand, within RR42_RS30950 at 2327.359 kb on + strand, within RR42_RS30950 at 2327.360 kb on - strand, within RR42_RS30950 at 2327.360 kb on - strand, within RR42_RS30950 at 2327.360 kb on - strand, within RR42_RS30950 at 2327.548 kb on + strand, within RR42_RS30950 at 2327.548 kb on + strand, within RR42_RS30950 at 2327.590 kb on + strand, within RR42_RS30950 at 2327.592 kb on - strand, within RR42_RS30950 at 2327.857 kb on + strand, within RR42_RS30950 at 2327.858 kb on - strand, within RR42_RS30950 at 2327.858 kb on - strand, within RR42_RS30950 at 2327.962 kb on + strand, within RR42_RS30950 at 2327.962 kb on + strand, within RR42_RS30950 at 2327.963 kb on - strand, within RR42_RS30950 at 2328.366 kb on + strand, within RR42_RS30950 at 2328.366 kb on + strand, within RR42_RS30950 at 2328.367 kb on - strand, within RR42_RS30950 at 2328.367 kb on - strand, within RR42_RS30950 at 2328.382 kb on + strand, within RR42_RS30950 at 2328.382 kb on + strand, within RR42_RS30950 at 2328.382 kb on + strand, within RR42_RS30950 at 2328.382 kb on + strand, within RR42_RS30950 at 2328.383 kb on - strand, within RR42_RS30950 at 2328.383 kb on - strand, within RR42_RS30950 at 2328.384 kb on + strand, within RR42_RS30950 at 2328.385 kb on - strand, within RR42_RS30950 at 2328.385 kb on - strand, within RR42_RS30950 at 2328.410 kb on + strand, within RR42_RS30950 at 2328.792 kb on - strand at 2328.889 kb on - strand at 2328.952 kb on - strand at 2328.989 kb on + strand at 2328.989 kb on + strand at 2329.016 kb on + strand at 2329.016 kb on + strand at 2329.016 kb on + strand at 2329.017 kb on - strand at 2329.017 kb on - strand at 2329.017 kb on - strand at 2329.177 kb on + strand at 2329.177 kb on + strand at 2329.279 kb on + strand at 2329.400 kb on + strand at 2329.400 kb on + strand at 2329.465 kb on + strand, within RR42_RS30955 at 2329.711 kb on + strand, within RR42_RS30955 at 2329.711 kb on + strand, within RR42_RS30955 at 2329.714 kb on + strand, within RR42_RS30955 at 2329.715 kb on - strand, within RR42_RS30955 at 2329.868 kb on - strand, within RR42_RS30955 at 2329.868 kb on - strand, within RR42_RS30955
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 2,325,070 - RR42_RS30945 0.31 +0.3 2,325,070 - RR42_RS30945 0.31 +0.3 2,325,269 + RR42_RS30945 0.46 -0.2 2,325,270 - RR42_RS30945 0.46 +0.3 2,325,605 + RR42_RS30945 0.72 -0.7 2,325,606 - RR42_RS30945 0.73 -3.4 2,325,891 - +0.1 2,325,904 + -0.2 2,325,905 - +0.2 2,325,956 + -0.9 2,326,057 + -1.1 2,326,057 + +0.1 2,326,057 + -0.5 2,326,057 + -0.9 2,326,057 + +0.2 2,326,058 - -0.3 2,326,058 - -0.0 2,326,058 - -1.9 2,326,058 - +0.4 2,326,063 + +0.5 2,326,064 - +0.0 2,326,064 - +0.6 2,326,064 - -1.7 2,326,064 - -1.8 2,326,235 - -0.3 2,326,278 + -2.2 2,326,278 + -0.5 2,326,279 - -1.4 2,326,282 + +0.1 2,326,282 + +0.9 2,326,282 + +0.7 2,326,282 + -0.1 2,326,283 - -3.9 2,326,283 - +0.4 2,326,283 - -1.7 2,326,390 + RR42_RS30950 0.13 +0.5 2,326,391 - RR42_RS30950 0.13 -0.3 2,326,391 - RR42_RS30950 0.13 -2.1 2,326,391 - RR42_RS30950 0.13 +0.2 2,326,391 - RR42_RS30950 0.13 +0.5 2,326,444 + RR42_RS30950 0.15 +1.0 2,326,444 + RR42_RS30950 0.15 +0.7 2,326,445 - RR42_RS30950 0.15 -0.1 2,326,553 - RR42_RS30950 0.19 -3.1 2,326,588 + RR42_RS30950 0.20 +0.7 2,326,654 + RR42_RS30950 0.22 -0.7 2,326,654 + RR42_RS30950 0.22 +0.6 2,326,654 + RR42_RS30950 0.22 -2.2 2,326,679 - RR42_RS30950 0.23 -0.2 2,326,961 - RR42_RS30950 0.32 -0.1 2,326,961 - RR42_RS30950 0.32 +0.6 2,327,115 + RR42_RS30950 0.37 +0.1 2,327,115 + RR42_RS30950 0.37 +1.0 2,327,116 - RR42_RS30950 0.37 -2.7 2,327,116 - RR42_RS30950 0.37 -0.6 2,327,138 - RR42_RS30950 0.37 -0.2 2,327,138 - RR42_RS30950 0.37 -0.9 2,327,138 - RR42_RS30950 0.37 +0.6 2,327,359 + RR42_RS30950 0.44 -2.1 2,327,359 + RR42_RS30950 0.44 +0.1 2,327,360 - RR42_RS30950 0.44 +1.3 2,327,360 - RR42_RS30950 0.44 -2.3 2,327,360 - RR42_RS30950 0.44 -0.2 2,327,548 + RR42_RS30950 0.50 +1.6 2,327,548 + RR42_RS30950 0.50 -0.1 2,327,590 + RR42_RS30950 0.52 -0.3 2,327,592 - RR42_RS30950 0.52 -1.9 2,327,857 + RR42_RS30950 0.60 -0.1 2,327,858 - RR42_RS30950 0.60 -0.5 2,327,858 - RR42_RS30950 0.60 +0.9 2,327,962 + RR42_RS30950 0.64 +0.2 2,327,962 + RR42_RS30950 0.64 -0.1 2,327,963 - RR42_RS30950 0.64 -1.1 2,328,366 + RR42_RS30950 0.77 -0.6 2,328,366 + RR42_RS30950 0.77 +0.9 2,328,367 - RR42_RS30950 0.77 +0.7 2,328,367 - RR42_RS30950 0.77 -1.2 2,328,382 + RR42_RS30950 0.77 -1.5 2,328,382 + RR42_RS30950 0.77 +1.2 2,328,382 + RR42_RS30950 0.77 -1.7 2,328,382 + RR42_RS30950 0.77 +0.2 2,328,383 - RR42_RS30950 0.77 -2.2 2,328,383 - RR42_RS30950 0.77 +0.6 2,328,384 + RR42_RS30950 0.77 -0.2 2,328,385 - RR42_RS30950 0.77 +0.1 2,328,385 - RR42_RS30950 0.77 -0.7 2,328,410 + RR42_RS30950 0.78 -0.5 2,328,792 - -0.8 2,328,889 - -2.6 2,328,952 - +0.9 2,328,989 + +0.1 2,328,989 + +1.2 2,329,016 + -1.1 2,329,016 + -1.1 2,329,016 + -0.7 2,329,017 - +2.9 2,329,017 - -0.7 2,329,017 - -0.8 2,329,177 + -0.2 2,329,177 + -2.4 2,329,279 + -0.4 2,329,400 + +0.7 2,329,400 + -0.6 2,329,465 + RR42_RS30955 0.13 +0.4 2,329,711 + RR42_RS30955 0.30 -1.7 2,329,711 + RR42_RS30955 0.30 +0.3 2,329,714 + RR42_RS30955 0.30 +1.5 2,329,715 - RR42_RS30955 0.30 +0.5 2,329,868 - RR42_RS30955 0.41 -0.5 2,329,868 - RR42_RS30955 0.41 +1.9
Or see this region's nucleotide sequence