Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30935
Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Deoxyribonucleic from herring sperm 5 mg/mL |
---|---|---|---|---|---|
remove | |||||
2,322,140 | - | RR42_RS30930 | 0.75 | +2.9 | |
2,322,156 | + | RR42_RS30930 | 0.76 | +4.4 | |
2,322,381 | - | RR42_RS30930 | 0.85 | +2.4 | |
2,322,503 | - | +3.0 | |||
2,322,647 | + | +1.3 | |||
2,322,647 | + | -2.8 | |||
2,322,647 | + | +2.4 | |||
2,322,647 | + | +2.5 | |||
2,322,823 | - | -1.4 | |||
2,322,856 | + | -0.0 | |||
2,322,892 | - | -1.1 | |||
2,322,892 | - | -1.2 | |||
2,322,892 | - | -0.5 | |||
2,322,893 | + | +0.4 | |||
2,322,893 | + | -0.8 | |||
2,322,893 | + | +0.5 | |||
2,322,893 | + | +0.2 | |||
2,322,894 | - | -1.4 | |||
2,322,894 | - | +0.7 | |||
2,322,896 | - | -0.4 | |||
2,322,896 | - | +0.0 | |||
2,322,896 | - | +0.4 | |||
2,322,896 | - | -0.7 | |||
2,323,052 | + | RR42_RS30935 | 0.36 | +0.9 | |
2,323,053 | - | RR42_RS30935 | 0.36 | +0.2 | |
2,323,233 | + | RR42_RS30935 | 0.81 | +0.8 | |
2,323,254 | + | RR42_RS30935 | 0.86 | +0.2 | |
2,323,254 | + | RR42_RS30935 | 0.86 | +0.3 | |
2,323,255 | - | RR42_RS30935 | 0.86 | +0.7 | |
2,323,255 | - | RR42_RS30935 | 0.86 | -0.1 | |
2,323,330 | + | -0.7 | |||
2,323,684 | + | RR42_RS30940 | 0.24 | +0.7 | |
2,323,684 | + | RR42_RS30940 | 0.24 | -0.2 |
Or see this region's nucleotide sequence