Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29400

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,949,138	+				-2.0
1,949,139	-				+0.9
1,949,139	-				+2.5
1,949,139	-				-0.5
1,949,192	+		RR42_RS29395	0.15	+0.2
1,949,192	+		RR42_RS29395	0.15	+0.1
1,949,192	+		RR42_RS29395	0.15	+1.4
1,949,192	+		RR42_RS29395	0.15	+0.6
1,949,192	+		RR42_RS29395	0.15	-0.2
1,949,193	-		RR42_RS29395	0.15	+0.6
1,949,193	-		RR42_RS29395	0.15	+1.2
1,949,193	-		RR42_RS29395	0.15	+0.3
1,949,193	-		RR42_RS29395	0.15	+0.5
1,949,193	-		RR42_RS29395	0.15	-0.4
1,949,344	+		RR42_RS29395	0.34	+0.9
1,949,344	+		RR42_RS29395	0.34	-2.4
1,949,344	+		RR42_RS29395	0.34	-0.7
1,949,345	-		RR42_RS29395	0.35	-1.7
1,949,345	-		RR42_RS29395	0.35	+1.2
1,949,345	-		RR42_RS29395	0.35	+0.4
1,949,345	-		RR42_RS29395	0.35	+0.4
1,949,702	+		RR42_RS29395	0.81	+0.4
1,949,702	+		RR42_RS29395	0.81	+0.3
1,949,703	-		RR42_RS29395	0.81	-0.9
1,949,703	-		RR42_RS29395	0.81	+0.6
1,949,703	-		RR42_RS29395	0.81	-0.7
1,949,703	-		RR42_RS29395	0.81	-0.4
1,949,703	-		RR42_RS29395	0.81	-0.5
1,949,703	-		RR42_RS29395	0.81	-1.4
1,949,792	+				+0.8
1,949,812	+				+1.5
1,949,813	-				-0.2
1,949,879	+				-0.7
1,949,879	+				-1.4
1,949,946	-				-0.3
1,949,946	-				+0.1
1,949,946	-				+1.0
1,949,946	-				+2.3
1,949,993	-				+0.2
1,950,033	+				+0.4
1,950,034	-				+0.9
1,950,138	+		RR42_RS29400	0.17	-0.4
1,950,139	-		RR42_RS29400	0.17	+0.6
1,950,233	+		RR42_RS29400	0.29	-1.0
1,950,233	+		RR42_RS29400	0.29	-0.5
1,950,233	+		RR42_RS29400	0.29	+0.9
1,950,254	+		RR42_RS29400	0.31	-0.1
1,950,258	+		RR42_RS29400	0.32	+0.5
1,950,258	+		RR42_RS29400	0.32	-0.3
1,950,258	+		RR42_RS29400	0.32	+0.9
1,950,258	+		RR42_RS29400	0.32	-0.2
1,950,258	+		RR42_RS29400	0.32	-0.2
1,950,258	+		RR42_RS29400	0.32	+0.4
1,950,259	-		RR42_RS29400	0.32	-0.7
1,950,259	-		RR42_RS29400	0.32	-1.7
1,950,259	-		RR42_RS29400	0.32	+0.7
1,950,259	-		RR42_RS29400	0.32	+1.9
1,950,259	-		RR42_RS29400	0.32	+1.6
1,950,259	-		RR42_RS29400	0.32	-1.1
1,950,259	-		RR42_RS29400	0.32	-1.7
1,950,306	+		RR42_RS29400	0.38	+0.9
1,950,306	+		RR42_RS29400	0.38	+0.8
1,950,307	-		RR42_RS29400	0.38	-0.6
1,950,364	-		RR42_RS29400	0.45	+0.3
1,950,510	+		RR42_RS29400	0.63	+0.4
1,950,510	+		RR42_RS29400	0.63	+0.0
1,950,510	+		RR42_RS29400	0.63	+0.1
1,950,510	+		RR42_RS29400	0.63	-0.2
1,950,561	+		RR42_RS29400	0.69	-0.9
1,950,561	+		RR42_RS29400	0.69	+0.4
1,950,562	-		RR42_RS29400	0.69	-0.1
1,950,563	+		RR42_RS29400	0.69	-0.7
1,950,564	-		RR42_RS29400	0.69	-0.7
1,950,624	+		RR42_RS29400	0.77	-1.4
1,950,624	+		RR42_RS29400	0.77	+0.4
1,950,624	+		RR42_RS29400	0.77	+0.8
1,950,624	+		RR42_RS29400	0.77	+0.7
1,950,624	+		RR42_RS29400	0.77	+0.7
1,950,624	+		RR42_RS29400	0.77	-0.9
1,950,625	-		RR42_RS29400	0.77	+0.8
1,950,625	-		RR42_RS29400	0.77	+0.6
1,950,625	-		RR42_RS29400	0.77	+0.6
1,950,625	-		RR42_RS29400	0.77	+0.4
1,950,625	-		RR42_RS29400	0.77	-1.7
1,950,625	-		RR42_RS29400	0.77	+0.6
1,950,687	-		RR42_RS29400	0.85	+0.8
1,950,699	+		RR42_RS29400	0.86	+0.1
1,950,700	-		RR42_RS29400	0.86	-0.1
1,950,700	-		RR42_RS29400	0.86	-3.3
1,950,700	-		RR42_RS29400	0.86	-0.8
1,950,700	-		RR42_RS29400	0.86	-0.5
1,950,701	+		RR42_RS29400	0.86	-0.3
1,950,701	+		RR42_RS29400	0.86	+0.4
1,950,701	+		RR42_RS29400	0.86	-2.0
1,950,701	+		RR42_RS29400	0.86	-1.1
1,950,702	-		RR42_RS29400	0.86	-1.2
1,950,702	-		RR42_RS29400	0.86	+0.3
1,950,702	-		RR42_RS29400	0.86	-0.1
1,950,953	+		RR42_RS29405	0.16	-1.9
1,950,953	+		RR42_RS29405	0.16	+0.5
1,950,953	+		RR42_RS29405	0.16	+0.5
1,950,953	+		RR42_RS29405	0.16	+0.4
1,950,954	-		RR42_RS29405	0.16	+0.9
1,950,954	-		RR42_RS29405	0.16	+1.1
1,950,954	-		RR42_RS29405	0.16	-0.3
1,950,977	+		RR42_RS29405	0.19	-0.3
1,950,978	-		RR42_RS29405	0.19	-1.3
1,950,983	+		RR42_RS29405	0.19	-1.1
1,950,983	+		RR42_RS29405	0.19	+0.4
1,950,984	-		RR42_RS29405	0.19	+0.0
1,950,984	-		RR42_RS29405	0.19	-0.7
1,950,984	-		RR42_RS29405	0.19	+0.4
1,951,006	+		RR42_RS29405	0.22	+0.9
1,951,007	-		RR42_RS29405	0.22	-0.7
1,951,007	-		RR42_RS29405	0.22	+0.1
1,951,018	-		RR42_RS29405	0.23	-1.4
1,951,022	+		RR42_RS29405	0.24	-1.4
1,951,022	+		RR42_RS29405	0.24	+0.2
1,951,023	-		RR42_RS29405	0.24	+0.2
1,951,193	+		RR42_RS29405	0.43	+0.3
1,951,193	+		RR42_RS29405	0.43	-0.0
1,951,224	-		RR42_RS29405	0.46	+0.0
1,951,446	-		RR42_RS29405	0.71	-0.7
1,951,452	+		RR42_RS29405	0.71	+0.5
1,951,453	-		RR42_RS29405	0.71	+0.6
1,951,550	+		RR42_RS29405	0.82	+0.2
1,951,550	+		RR42_RS29405	0.82	-0.1
1,951,551	-		RR42_RS29405	0.82	-0.9
1,951,551	-		RR42_RS29405	0.82	+0.3
1,951,551	-		RR42_RS29405	0.82	+1.2
1,951,556	+		RR42_RS29405	0.83	-0.2
1,951,556	+		RR42_RS29405	0.83	-0.5
1,951,556	+		RR42_RS29405	0.83	-1.0
1,951,557	-		RR42_RS29405	0.83	-0.2
1,951,790	-				+1.2
1,951,790	-				-0.2