Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28825

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,818,735	+		RR42_RS28820	0.56	-0.3
1,818,735	+		RR42_RS28820	0.56	+0.6
1,818,735	+		RR42_RS28820	0.56	-0.5
1,818,736	-		RR42_RS28820	0.57	+0.5
1,818,740	-		RR42_RS28820	0.57	+0.6
1,818,883	+		RR42_RS28820	0.63	-0.2
1,818,907	+		RR42_RS28820	0.65	+1.2
1,818,907	+		RR42_RS28820	0.65	-0.5
1,818,907	+		RR42_RS28820	0.65	-0.4
1,818,907	+		RR42_RS28820	0.65	+1.5
1,818,908	-		RR42_RS28820	0.65	-0.3
1,818,908	-		RR42_RS28820	0.65	+0.2
1,818,937	+		RR42_RS28820	0.66	+0.6
1,818,938	-		RR42_RS28820	0.66	-1.2
1,819,003	+		RR42_RS28820	0.69	+1.8
1,819,013	-		RR42_RS28820	0.70	+0.6
1,819,084	+		RR42_RS28820	0.73	-1.2
1,819,085	-		RR42_RS28820	0.73	+0.4
1,819,183	+		RR42_RS28820	0.77	-0.9
1,819,184	-		RR42_RS28820	0.78	+0.3
1,819,184	-		RR42_RS28820	0.78	+0.7
1,819,184	-		RR42_RS28820	0.78	+0.9
1,819,196	-		RR42_RS28820	0.78	+0.9
1,819,196	-		RR42_RS28820	0.78	+0.1
1,819,196	-		RR42_RS28820	0.78	+1.2
1,819,255	+		RR42_RS28820	0.81	-1.0
1,819,255	+		RR42_RS28820	0.81	-1.4
1,819,256	-		RR42_RS28820	0.81	+1.5
1,819,256	-		RR42_RS28820	0.81	-0.7
1,819,432	+		RR42_RS28820	0.89	+0.2
1,819,432	+		RR42_RS28820	0.89	-0.8
1,819,432	+		RR42_RS28820	0.89	-0.6
1,819,433	-		RR42_RS28820	0.89	+0.2
1,819,448	-		RR42_RS28820	0.90	+0.1
1,819,511	-				-0.7
1,819,525	+				-2.3
1,819,526	-				+0.8
1,819,580	-				-1.7
1,819,601	-				+0.1
1,819,660	+				-0.0
1,819,661	-				-0.0
1,819,661	-				-1.1
1,819,790	+				+0.2
1,819,791	-				-0.2
1,819,849	+				+2.1
1,819,849	+				+0.5
1,819,897	+				-1.4
1,819,897	+				-2.0
1,820,218	+		RR42_RS28825	0.21	+0.9
1,820,218	+		RR42_RS28825	0.21	-1.1
1,820,265	+		RR42_RS28825	0.23	+0.1
1,820,293	+		RR42_RS28825	0.24	+1.9
1,820,390	-		RR42_RS28825	0.28	-0.2
1,820,390	-		RR42_RS28825	0.28	+0.6
1,820,390	-		RR42_RS28825	0.28	+1.0
1,820,390	-		RR42_RS28825	0.28	-1.0
1,820,407	+		RR42_RS28825	0.29	-0.2
1,820,408	-		RR42_RS28825	0.29	-1.3
1,820,511	+		RR42_RS28825	0.33	-0.7
1,820,600	+		RR42_RS28825	0.37	+0.8
1,820,600	+		RR42_RS28825	0.37	-0.4
1,820,653	+		RR42_RS28825	0.39	+0.3
1,820,722	+		RR42_RS28825	0.42	-1.8
1,820,722	+		RR42_RS28825	0.42	+0.4
1,820,722	+		RR42_RS28825	0.42	+0.7
1,820,723	-		RR42_RS28825	0.42	-0.3
1,820,723	-				+0.9
1,820,803	-		RR42_RS28825	0.45	+0.7
1,820,911	+		RR42_RS28825	0.50	+0.1
1,820,912	-		RR42_RS28825	0.50	-2.1
1,821,040	+		RR42_RS28825	0.55	-0.4
1,821,041	-		RR42_RS28825	0.55	-3.5
1,821,041	-		RR42_RS28825	0.55	-0.7
1,821,053	+		RR42_RS28825	0.55	-0.7
1,821,054	-		RR42_RS28825	0.56	-0.1
1,821,226	+		RR42_RS28825	0.63	+0.7
1,821,227	-		RR42_RS28825	0.63	-0.7
1,821,294	+		RR42_RS28825	0.66	-1.9
1,821,398	-		RR42_RS28825	0.70	-1.6
1,821,464	-		RR42_RS28825	0.73	+0.2
1,821,464	-		RR42_RS28825	0.73	-1.3
1,821,464	-		RR42_RS28825	0.73	-0.7
1,821,534	-		RR42_RS28825	0.75	-0.8
1,821,544	+		RR42_RS28825	0.76	-0.8
1,821,544	+		RR42_RS28825	0.76	+0.8
1,821,544	+		RR42_RS28825	0.76	+0.3
1,821,701	+		RR42_RS28825	0.82	-0.1
1,821,702	-		RR42_RS28825	0.82	+0.2
1,821,702	-		RR42_RS28825	0.82	+0.9
1,821,704	-		RR42_RS28825	0.83	+1.2
1,821,892	+				-3.4
1,821,907	+				+0.7
1,821,908	-				-0.2
1,821,978	+				+0.0
1,822,131	+				+0.4
1,822,131	+				+0.2
1,822,132	-				-2.3
1,822,221	-		RR42_RS28830	0.27	+1.9
1,822,278	+		RR42_RS28830	0.44	-0.1
1,822,279	-		RR42_RS28830	0.45	-0.4
1,822,279	-		RR42_RS28830	0.45	-1.0
1,822,456	+				-0.7
1,822,457	-				-0.1
1,822,494	-				-0.5
1,822,528	-				+0.5
1,822,631	+				-0.9
1,822,632	-				-0.6
1,822,739	-				-0.1
1,822,838	+				-0.7
1,822,839	-				-0.7