Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27710 and RR42_RS27715 are separated by 203 nucleotides RR42_RS27715 and RR42_RS27720 are separated by 17 nucleotides RR42_RS27720 and RR42_RS27725 are separated by 5 nucleotides RR42_RS27725 and RR42_RS27730 are separated by 102 nucleotides
RR42_RS27710: RR42_RS27710 - LysR family transcriptional regulator, at 1,580,794 to 1,581,705
_RS27710
RR42_RS27715: RR42_RS27715 - hypothetical protein, at 1,581,909 to 1,582,556
_RS27715
RR42_RS27720: RR42_RS27720 - MFS transporter, at 1,582,574 to 1,583,896
_RS27720
RR42_RS27725: RR42_RS27725 - GntR family transcriptional regulator, at 1,583,902 to 1,584,612
_RS27725
RR42_RS27730: RR42_RS27730 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,584,715 to 1,585,674
_RS27730
Position (kb) 1582
1583
1584 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1581.590 kb on + strand, within RR42_RS27710 at 1581.832 kb on + strand at 1582.041 kb on + strand, within RR42_RS27715 at 1582.068 kb on + strand, within RR42_RS27715 at 1582.081 kb on - strand, within RR42_RS27715 at 1582.120 kb on - strand, within RR42_RS27715 at 1582.120 kb on - strand, within RR42_RS27715 at 1582.345 kb on - strand, within RR42_RS27715 at 1582.369 kb on + strand, within RR42_RS27715 at 1582.370 kb on - strand, within RR42_RS27715 at 1582.370 kb on - strand, within RR42_RS27715 at 1582.515 kb on + strand at 1582.685 kb on + strand at 1582.701 kb on - strand at 1582.701 kb on - strand at 1582.701 kb on - strand at 1582.703 kb on - strand at 1582.787 kb on + strand, within RR42_RS27720 at 1582.787 kb on + strand, within RR42_RS27720 at 1582.787 kb on + strand, within RR42_RS27720 at 1582.788 kb on - strand, within RR42_RS27720 at 1582.928 kb on + strand, within RR42_RS27720 at 1582.928 kb on + strand, within RR42_RS27720 at 1582.928 kb on + strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1583.119 kb on + strand, within RR42_RS27720 at 1583.399 kb on + strand, within RR42_RS27720 at 1583.399 kb on + strand, within RR42_RS27720 at 1583.399 kb on + strand, within RR42_RS27720 at 1583.400 kb on - strand, within RR42_RS27720 at 1583.400 kb on - strand, within RR42_RS27720 at 1583.526 kb on + strand, within RR42_RS27720 at 1583.528 kb on + strand, within RR42_RS27720 at 1583.528 kb on + strand, within RR42_RS27720 at 1583.651 kb on + strand, within RR42_RS27720 at 1583.652 kb on - strand, within RR42_RS27720 at 1583.702 kb on + strand, within RR42_RS27720 at 1583.723 kb on + strand, within RR42_RS27720 at 1583.725 kb on + strand, within RR42_RS27720 at 1583.725 kb on + strand, within RR42_RS27720 at 1583.725 kb on + strand, within RR42_RS27720 at 1583.816 kb on + strand at 1583.816 kb on + strand at 1583.816 kb on + strand at 1583.817 kb on - strand at 1584.292 kb on + strand, within RR42_RS27725 at 1584.537 kb on + strand, within RR42_RS27725 at 1584.539 kb on + strand, within RR42_RS27725 at 1584.540 kb on - strand, within RR42_RS27725 at 1584.540 kb on - strand, within RR42_RS27725 at 1584.666 kb on + strand at 1584.666 kb on + strand at 1584.667 kb on - strand at 1584.717 kb on - strand at 1584.803 kb on + strand at 1584.890 kb on + strand, within RR42_RS27730
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,581,590 + RR42_RS27710 0.87 +0.0 1,581,832 + -2.8 1,582,041 + RR42_RS27715 0.20 -2.4 1,582,068 + RR42_RS27715 0.25 -0.5 1,582,081 - RR42_RS27715 0.27 +1.0 1,582,120 - RR42_RS27715 0.33 -1.7 1,582,120 - RR42_RS27715 0.33 +1.0 1,582,345 - RR42_RS27715 0.67 +2.0 1,582,369 + RR42_RS27715 0.71 +0.4 1,582,370 - RR42_RS27715 0.71 +0.3 1,582,370 - RR42_RS27715 0.71 +0.6 1,582,515 + -2.1 1,582,685 + -0.6 1,582,701 - -2.5 1,582,701 - +0.2 1,582,701 - -0.3 1,582,703 - -0.3 1,582,787 + RR42_RS27720 0.16 +0.2 1,582,787 + RR42_RS27720 0.16 +0.2 1,582,787 + RR42_RS27720 0.16 -0.8 1,582,788 - RR42_RS27720 0.16 -0.5 1,582,928 + RR42_RS27720 0.27 +2.0 1,582,928 + RR42_RS27720 0.27 +0.5 1,582,928 + RR42_RS27720 0.27 -0.5 1,582,929 - RR42_RS27720 0.27 +0.0 1,582,929 - RR42_RS27720 0.27 -2.5 1,582,929 - RR42_RS27720 0.27 +0.5 1,582,929 - RR42_RS27720 0.27 +0.1 1,582,929 - RR42_RS27720 0.27 +0.1 1,582,929 - RR42_RS27720 0.27 +0.6 1,582,929 - RR42_RS27720 0.27 -0.1 1,582,929 - RR42_RS27720 0.27 +0.3 1,583,119 + RR42_RS27720 0.41 -0.0 1,583,399 + RR42_RS27720 0.62 -0.3 1,583,399 + RR42_RS27720 0.62 +0.4 1,583,399 + RR42_RS27720 0.62 -0.6 1,583,400 - RR42_RS27720 0.62 -1.0 1,583,400 - RR42_RS27720 0.62 +1.1 1,583,526 + RR42_RS27720 0.72 -2.2 1,583,528 + RR42_RS27720 0.72 +1.0 1,583,528 + RR42_RS27720 0.72 -1.0 1,583,651 + RR42_RS27720 0.81 +1.0 1,583,652 - RR42_RS27720 0.81 +1.0 1,583,702 + RR42_RS27720 0.85 +0.9 1,583,723 + RR42_RS27720 0.87 +0.1 1,583,725 + RR42_RS27720 0.87 +1.4 1,583,725 + RR42_RS27720 0.87 +1.0 1,583,725 + RR42_RS27720 0.87 -0.2 1,583,816 + -1.2 1,583,816 + +0.2 1,583,816 + +0.5 1,583,817 - -1.0 1,584,292 + RR42_RS27725 0.55 -1.1 1,584,537 + RR42_RS27725 0.89 -1.8 1,584,539 + RR42_RS27725 0.90 +0.3 1,584,540 - RR42_RS27725 0.90 -1.0 1,584,540 - RR42_RS27725 0.90 +1.0 1,584,666 + -0.6 1,584,666 + -0.8 1,584,667 - +1.8 1,584,717 - -0.6 1,584,803 + +0.9 1,584,890 + RR42_RS27730 0.18 +0.8
Or see this region's nucleotide sequence