Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26070 and RR42_RS26075 are separated by 89 nucleotides RR42_RS26075 and RR42_RS26080 are separated by 85 nucleotides RR42_RS26080 and RR42_RS26085 are separated by 66 nucleotides
RR42_RS26070: RR42_RS26070 - cytochrome BD ubiquinol oxidase subunit II, at 1,198,223 to 1,199,227
_RS26070
RR42_RS26075: RR42_RS26075 - cytochrome D ubiquinol oxidase subunit I, at 1,199,317 to 1,200,627
_RS26075
RR42_RS26080: RR42_RS26080 - hypothetical protein, at 1,200,713 to 1,201,372
_RS26080
RR42_RS26085: RR42_RS26085 - acetoacetyl-CoA reductase, at 1,201,439 to 1,202,185
_RS26085
Position (kb)
1199
1200
1201 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1198.387 kb on - strand, within RR42_RS26070 at 1198.387 kb on - strand, within RR42_RS26070 at 1198.731 kb on + strand, within RR42_RS26070 at 1198.732 kb on - strand, within RR42_RS26070 at 1198.732 kb on - strand, within RR42_RS26070 at 1198.806 kb on + strand, within RR42_RS26070 at 1198.806 kb on + strand, within RR42_RS26070 at 1198.806 kb on + strand, within RR42_RS26070 at 1198.966 kb on - strand, within RR42_RS26070 at 1198.966 kb on - strand, within RR42_RS26070 at 1199.154 kb on + strand at 1199.154 kb on + strand at 1199.352 kb on - strand at 1199.449 kb on + strand, within RR42_RS26075 at 1199.450 kb on - strand, within RR42_RS26075 at 1199.456 kb on + strand, within RR42_RS26075 at 1199.492 kb on + strand, within RR42_RS26075 at 1199.493 kb on - strand, within RR42_RS26075 at 1200.149 kb on + strand, within RR42_RS26075 at 1200.150 kb on - strand, within RR42_RS26075 at 1200.327 kb on - strand, within RR42_RS26075 at 1200.348 kb on + strand, within RR42_RS26075 at 1200.465 kb on - strand, within RR42_RS26075 at 1200.573 kb on + strand at 1200.573 kb on + strand at 1200.967 kb on + strand, within RR42_RS26080 at 1201.372 kb on + strand at 1201.372 kb on + strand at 1201.372 kb on + strand at 1201.373 kb on - strand at 1201.373 kb on - strand at 1201.398 kb on - strand at 1201.398 kb on - strand at 1201.398 kb on - strand at 1201.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,198,387 - RR42_RS26070 0.16 +0.8 1,198,387 - RR42_RS26070 0.16 +0.8 1,198,731 + RR42_RS26070 0.51 +0.9 1,198,732 - RR42_RS26070 0.51 -0.7 1,198,732 - RR42_RS26070 0.51 +2.4 1,198,806 + RR42_RS26070 0.58 +1.1 1,198,806 + RR42_RS26070 0.58 -0.2 1,198,806 + RR42_RS26070 0.58 -0.1 1,198,966 - RR42_RS26070 0.74 -1.7 1,198,966 - RR42_RS26070 0.74 -0.9 1,199,154 + -1.7 1,199,154 + +0.4 1,199,352 - +0.7 1,199,449 + RR42_RS26075 0.10 +1.0 1,199,450 - RR42_RS26075 0.10 +0.2 1,199,456 + RR42_RS26075 0.11 -1.5 1,199,492 + RR42_RS26075 0.13 -1.0 1,199,493 - RR42_RS26075 0.13 +0.9 1,200,149 + RR42_RS26075 0.63 -1.4 1,200,150 - RR42_RS26075 0.64 +0.5 1,200,327 - RR42_RS26075 0.77 +0.6 1,200,348 + RR42_RS26075 0.79 +0.4 1,200,465 - RR42_RS26075 0.88 -0.3 1,200,573 + -0.6 1,200,573 + +0.4 1,200,967 + RR42_RS26080 0.38 -2.8 1,201,372 + -0.3 1,201,372 + -0.9 1,201,372 + +0.8 1,201,373 - +1.2 1,201,373 - +1.4 1,201,398 - +1.1 1,201,398 - +0.5 1,201,398 - +0.3 1,201,513 - +0.5
Or see this region's nucleotide sequence