Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26015 and RR42_RS26020 are separated by 260 nucleotides RR42_RS26020 and RR42_RS26025 are separated by 345 nucleotides
RR42_RS26015: RR42_RS26015 - hypothetical protein, at 1,181,931 to 1,183,433
_RS26015
RR42_RS26020: RR42_RS26020 - hydrolase, at 1,183,694 to 1,184,539
_RS26020
RR42_RS26025: RR42_RS26025 - ornithine decarboxylase, at 1,184,885 to 1,187,578
_RS26025
Position (kb)
1183
1184
1185 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1182.730 kb on + strand, within RR42_RS26015 at 1182.730 kb on + strand, within RR42_RS26015 at 1182.865 kb on + strand, within RR42_RS26015 at 1182.865 kb on + strand, within RR42_RS26015 at 1182.866 kb on - strand, within RR42_RS26015 at 1182.866 kb on - strand, within RR42_RS26015 at 1182.866 kb on - strand, within RR42_RS26015 at 1183.171 kb on + strand, within RR42_RS26015 at 1183.171 kb on + strand, within RR42_RS26015 at 1183.172 kb on - strand, within RR42_RS26015 at 1183.172 kb on - strand, within RR42_RS26015 at 1183.231 kb on + strand, within RR42_RS26015 at 1183.232 kb on - strand, within RR42_RS26015 at 1183.258 kb on - strand, within RR42_RS26015 at 1183.306 kb on - strand at 1183.356 kb on + strand at 1183.467 kb on + strand at 1183.469 kb on + strand at 1183.470 kb on - strand at 1183.470 kb on - strand at 1183.491 kb on + strand at 1183.539 kb on + strand at 1183.613 kb on + strand at 1183.669 kb on + strand at 1183.669 kb on + strand at 1183.769 kb on + strand at 1183.910 kb on + strand, within RR42_RS26020 at 1183.910 kb on + strand, within RR42_RS26020 at 1183.911 kb on - strand, within RR42_RS26020 at 1183.911 kb on - strand, within RR42_RS26020 at 1183.911 kb on - strand, within RR42_RS26020 at 1184.120 kb on + strand, within RR42_RS26020 at 1184.121 kb on - strand, within RR42_RS26020 at 1184.273 kb on - strand, within RR42_RS26020 at 1184.331 kb on - strand, within RR42_RS26020 at 1184.331 kb on - strand, within RR42_RS26020 at 1184.331 kb on - strand, within RR42_RS26020 at 1184.592 kb on - strand at 1184.820 kb on + strand at 1184.825 kb on - strand at 1184.825 kb on - strand at 1184.828 kb on + strand at 1184.828 kb on + strand at 1185.015 kb on + strand at 1185.145 kb on + strand at 1185.169 kb on + strand, within RR42_RS26025
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,182,730 + RR42_RS26015 0.53 +0.2 1,182,730 + RR42_RS26015 0.53 +0.6 1,182,865 + RR42_RS26015 0.62 -2.6 1,182,865 + RR42_RS26015 0.62 +0.3 1,182,866 - RR42_RS26015 0.62 -0.4 1,182,866 - RR42_RS26015 0.62 +1.0 1,182,866 - RR42_RS26015 0.62 -0.0 1,183,171 + RR42_RS26015 0.83 -1.2 1,183,171 + RR42_RS26015 0.83 -0.3 1,183,172 - RR42_RS26015 0.83 +2.3 1,183,172 - RR42_RS26015 0.83 +0.1 1,183,231 + RR42_RS26015 0.86 -1.2 1,183,232 - RR42_RS26015 0.87 +0.1 1,183,258 - RR42_RS26015 0.88 +1.2 1,183,306 - -0.0 1,183,356 + -0.4 1,183,467 + -1.2 1,183,469 + +1.1 1,183,470 - -0.3 1,183,470 - +2.1 1,183,491 + +0.5 1,183,539 + -2.6 1,183,613 + -0.9 1,183,669 + +1.1 1,183,669 + +1.4 1,183,769 + -0.3 1,183,910 + RR42_RS26020 0.26 +1.3 1,183,910 + RR42_RS26020 0.26 -0.3 1,183,911 - RR42_RS26020 0.26 -0.9 1,183,911 - RR42_RS26020 0.26 +1.1 1,183,911 - RR42_RS26020 0.26 -1.6 1,184,120 + RR42_RS26020 0.50 +0.7 1,184,121 - RR42_RS26020 0.50 +0.6 1,184,273 - RR42_RS26020 0.68 -1.1 1,184,331 - RR42_RS26020 0.75 +0.8 1,184,331 - RR42_RS26020 0.75 -3.3 1,184,331 - RR42_RS26020 0.75 +0.8 1,184,592 - +0.4 1,184,820 + -0.1 1,184,825 - +0.1 1,184,825 - +0.4 1,184,828 + +0.1 1,184,828 + +0.3 1,185,015 + -0.3 1,185,145 + -1.0 1,185,169 + RR42_RS26025 0.11 -2.3
Or see this region's nucleotide sequence