Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25950 and RR42_RS25955 are separated by 38 nucleotides RR42_RS25955 and RR42_RS25960 are separated by 359 nucleotides
RR42_RS25950: RR42_RS25950 - hypothetical protein, at 1,164,335 to 1,165,504
_RS25950
RR42_RS25955: RR42_RS25955 - transcriptional regulator, at 1,165,543 to 1,165,941
_RS25955
RR42_RS25960: RR42_RS25960 - hypothetical protein, at 1,166,301 to 1,170,614
_RS25960
Position (kb) 1165
1166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1164.579 kb on + strand, within RR42_RS25950 at 1164.579 kb on + strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.580 kb on - strand, within RR42_RS25950 at 1164.582 kb on + strand, within RR42_RS25950 at 1164.582 kb on + strand, within RR42_RS25950 at 1164.735 kb on + strand, within RR42_RS25950 at 1164.735 kb on + strand, within RR42_RS25950 at 1164.875 kb on + strand, within RR42_RS25950 at 1165.218 kb on - strand, within RR42_RS25950 at 1165.312 kb on - strand, within RR42_RS25950 at 1165.332 kb on + strand, within RR42_RS25950 at 1165.332 kb on + strand, within RR42_RS25950 at 1165.353 kb on + strand, within RR42_RS25950 at 1165.354 kb on - strand, within RR42_RS25950 at 1165.354 kb on - strand, within RR42_RS25950 at 1165.354 kb on - strand, within RR42_RS25950 at 1165.937 kb on - strand at 1165.937 kb on - strand at 1166.011 kb on - strand at 1166.038 kb on + strand at 1166.038 kb on + strand at 1166.039 kb on - strand at 1166.039 kb on - strand at 1166.047 kb on - strand at 1166.047 kb on - strand at 1166.190 kb on - strand at 1166.249 kb on + strand at 1166.251 kb on + strand at 1166.251 kb on + strand at 1166.252 kb on - strand at 1166.252 kb on - strand at 1166.252 kb on - strand at 1166.319 kb on + strand at 1166.320 kb on - strand at 1166.820 kb on + strand, within RR42_RS25960 at 1166.821 kb on - strand, within RR42_RS25960 at 1166.821 kb on - strand, within RR42_RS25960 at 1166.880 kb on + strand, within RR42_RS25960 at 1166.902 kb on - strand, within RR42_RS25960
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,164,579 + RR42_RS25950 0.21 +0.4 1,164,579 + RR42_RS25950 0.21 +0.0 1,164,580 - RR42_RS25950 0.21 -0.7 1,164,580 - RR42_RS25950 0.21 +0.2 1,164,580 - RR42_RS25950 0.21 +1.1 1,164,580 - RR42_RS25950 0.21 -0.0 1,164,580 - RR42_RS25950 0.21 -0.8 1,164,580 - RR42_RS25950 0.21 -0.3 1,164,580 - RR42_RS25950 0.21 +0.7 1,164,580 - RR42_RS25950 0.21 -0.5 1,164,580 - RR42_RS25950 0.21 -0.5 1,164,582 + RR42_RS25950 0.21 -3.4 1,164,582 + RR42_RS25950 0.21 +1.1 1,164,735 + RR42_RS25950 0.34 -0.7 1,164,735 + RR42_RS25950 0.34 +0.2 1,164,875 + RR42_RS25950 0.46 -0.0 1,165,218 - RR42_RS25950 0.75 -1.3 1,165,312 - RR42_RS25950 0.84 +0.9 1,165,332 + RR42_RS25950 0.85 -1.5 1,165,332 + RR42_RS25950 0.85 -1.2 1,165,353 + RR42_RS25950 0.87 +2.5 1,165,354 - RR42_RS25950 0.87 -0.5 1,165,354 - RR42_RS25950 0.87 +0.9 1,165,354 - RR42_RS25950 0.87 +0.7 1,165,937 - +0.5 1,165,937 - +0.1 1,166,011 - -0.8 1,166,038 + -0.2 1,166,038 + -0.9 1,166,039 - +0.6 1,166,039 - +0.1 1,166,047 - +0.0 1,166,047 - +0.4 1,166,190 - +0.5 1,166,249 + -0.5 1,166,251 + -0.2 1,166,251 + -0.3 1,166,252 - +1.6 1,166,252 - -1.5 1,166,252 - -1.9 1,166,319 + +0.3 1,166,320 - +0.9 1,166,820 + RR42_RS25960 0.12 +0.0 1,166,821 - RR42_RS25960 0.12 +0.4 1,166,821 - RR42_RS25960 0.12 +1.5 1,166,880 + RR42_RS25960 0.13 +0.7 1,166,902 - RR42_RS25960 0.14 -1.3
Or see this region's nucleotide sequence