Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25085 and RR42_RS25090 are separated by 156 nucleotides RR42_RS25090 and RR42_RS25095 are separated by 166 nucleotides RR42_RS25095 and RR42_RS25100 are separated by 26 nucleotides RR42_RS25100 and RR42_RS25105 are separated by 24 nucleotides
RR42_RS25085: RR42_RS25085 - transcriptional regulator, at 966,622 to 967,557
_RS25085
RR42_RS25090: RR42_RS25090 - hypothetical protein, at 967,714 to 968,184
_RS25090
RR42_RS25095: RR42_RS25095 - citryl-CoA lyase, at 968,351 to 969,241
_RS25095
RR42_RS25100: RR42_RS25100 - dehydratase, at 969,268 to 969,729
_RS25100
RR42_RS25105: RR42_RS25105 - acyl-CoA dehydrogenase, at 969,754 to 970,920
_RS25105
Position (kb) 968
969
970 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 967.739 kb on - strand at 967.831 kb on + strand, within RR42_RS25090 at 967.831 kb on + strand, within RR42_RS25090 at 967.831 kb on + strand, within RR42_RS25090 at 967.831 kb on + strand, within RR42_RS25090 at 967.832 kb on - strand, within RR42_RS25090 at 967.832 kb on - strand, within RR42_RS25090 at 967.832 kb on - strand, within RR42_RS25090 at 967.864 kb on + strand, within RR42_RS25090 at 967.864 kb on + strand, within RR42_RS25090 at 968.111 kb on - strand, within RR42_RS25090 at 968.239 kb on + strand at 968.239 kb on + strand at 968.239 kb on + strand at 968.240 kb on - strand at 968.248 kb on - strand at 968.267 kb on - strand at 968.267 kb on - strand at 968.337 kb on - strand at 968.358 kb on + strand at 968.358 kb on + strand at 968.585 kb on + strand, within RR42_RS25095 at 968.591 kb on + strand, within RR42_RS25095 at 968.672 kb on - strand, within RR42_RS25095 at 968.771 kb on + strand, within RR42_RS25095 at 968.772 kb on - strand, within RR42_RS25095 at 968.772 kb on - strand, within RR42_RS25095 at 968.891 kb on + strand, within RR42_RS25095 at 968.952 kb on + strand, within RR42_RS25095 at 969.071 kb on + strand, within RR42_RS25095 at 969.071 kb on + strand, within RR42_RS25095 at 969.072 kb on - strand, within RR42_RS25095 at 969.072 kb on - strand, within RR42_RS25095 at 969.072 kb on - strand at 969.102 kb on - strand, within RR42_RS25095 at 969.253 kb on + strand at 969.254 kb on - strand at 969.254 kb on - strand at 969.254 kb on - strand at 969.373 kb on + strand, within RR42_RS25100 at 969.374 kb on - strand, within RR42_RS25100 at 969.418 kb on - strand, within RR42_RS25100 at 969.484 kb on + strand, within RR42_RS25100 at 969.484 kb on + strand, within RR42_RS25100 at 969.484 kb on + strand, within RR42_RS25100 at 969.484 kb on + strand, within RR42_RS25100 at 969.760 kb on + strand at 969.760 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 967,739 - +0.1 967,831 + RR42_RS25090 0.25 +0.6 967,831 + RR42_RS25090 0.25 -0.5 967,831 + RR42_RS25090 0.25 -2.8 967,831 + RR42_RS25090 0.25 -2.4 967,832 - RR42_RS25090 0.25 -0.5 967,832 - RR42_RS25090 0.25 +0.0 967,832 - RR42_RS25090 0.25 +0.2 967,864 + RR42_RS25090 0.32 -0.1 967,864 + RR42_RS25090 0.32 -1.4 968,111 - RR42_RS25090 0.84 +0.4 968,239 + +1.6 968,239 + +1.8 968,239 + +0.5 968,240 - +1.0 968,248 - +0.2 968,267 - +0.2 968,267 - +0.5 968,337 - -0.0 968,358 + -0.4 968,358 + +0.2 968,585 + RR42_RS25095 0.26 -2.3 968,591 + RR42_RS25095 0.27 -1.4 968,672 - RR42_RS25095 0.36 -1.2 968,771 + RR42_RS25095 0.47 +0.5 968,772 - RR42_RS25095 0.47 +0.6 968,772 - RR42_RS25095 0.47 -0.3 968,891 + RR42_RS25095 0.61 -0.9 968,952 + RR42_RS25095 0.67 -1.0 969,071 + RR42_RS25095 0.81 +1.2 969,071 + RR42_RS25095 0.81 -0.8 969,072 - RR42_RS25095 0.81 -1.6 969,072 - RR42_RS25095 0.81 -1.3 969,072 - +1.2 969,102 - RR42_RS25095 0.84 +0.9 969,253 + +0.2 969,254 - +0.6 969,254 - -0.2 969,254 - +1.0 969,373 + RR42_RS25100 0.23 -0.7 969,374 - RR42_RS25100 0.23 -3.2 969,418 - RR42_RS25100 0.32 -0.0 969,484 + RR42_RS25100 0.47 +0.3 969,484 + RR42_RS25100 0.47 +1.5 969,484 + RR42_RS25100 0.47 +1.9 969,484 + RR42_RS25100 0.47 -0.8 969,760 + +0.4 969,760 + +1.5
Or see this region's nucleotide sequence