Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24845 and RR42_RS24850 overlap by 1 nucleotides RR42_RS24850 and RR42_RS24855 are separated by 32 nucleotides
RR42_RS24845: RR42_RS24845 - iditol 2-dehydrogenase, at 911,968 to 913,023
_RS24845
RR42_RS24850: RR42_RS24850 - alpha/beta hydrolase, at 913,023 to 913,943
_RS24850
RR42_RS24855: RR42_RS24855 - MFS transporter, at 913,976 to 915,304
_RS24855
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 913.091 kb on - strand at 913.100 kb on - strand at 913.355 kb on - strand, within RR42_RS24850 at 913.525 kb on + strand, within RR42_RS24850 at 913.526 kb on - strand, within RR42_RS24850 at 913.526 kb on - strand, within RR42_RS24850 at 913.692 kb on + strand, within RR42_RS24850 at 913.712 kb on - strand, within RR42_RS24850 at 913.858 kb on + strand at 913.993 kb on - strand at 914.085 kb on + strand at 914.231 kb on + strand, within RR42_RS24855 at 914.232 kb on + strand, within RR42_RS24855 at 914.233 kb on - strand, within RR42_RS24855 at 914.459 kb on + strand, within RR42_RS24855 at 914.646 kb on - strand, within RR42_RS24855 at 914.646 kb on - strand, within RR42_RS24855 at 914.749 kb on - strand, within RR42_RS24855 at 914.914 kb on - strand, within RR42_RS24855 at 915.211 kb on - strand at 915.269 kb on + strand at 915.270 kb on - strand at 915.270 kb on - strand at 915.390 kb on + strand at 915.390 kb on + strand at 915.391 kb on - strand at 915.522 kb on - strand at 915.642 kb on + strand at 915.643 kb on + strand at 915.644 kb on - strand at 915.648 kb on - strand at 915.736 kb on - strand at 915.736 kb on - strand at 915.776 kb on - strand at 916.143 kb on - strand at 916.212 kb on + strand at 916.212 kb on + strand at 916.212 kb on + strand at 916.212 kb on + strand at 916.213 kb on - strand at 916.213 kb on - strand at 916.213 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 913,091 - +1.3 913,100 - -0.2 913,355 - RR42_RS24850 0.36 +0.1 913,525 + RR42_RS24850 0.55 +0.7 913,526 - RR42_RS24850 0.55 +0.5 913,526 - RR42_RS24850 0.55 -0.8 913,692 + RR42_RS24850 0.73 -0.8 913,712 - RR42_RS24850 0.75 -0.9 913,858 + +0.5 913,993 - -0.4 914,085 + -0.2 914,231 + RR42_RS24855 0.19 +1.6 914,232 + RR42_RS24855 0.19 +0.8 914,233 - RR42_RS24855 0.19 -1.0 914,459 + RR42_RS24855 0.36 +1.2 914,646 - RR42_RS24855 0.50 -0.6 914,646 - RR42_RS24855 0.50 +1.8 914,749 - RR42_RS24855 0.58 +0.3 914,914 - RR42_RS24855 0.71 +0.5 915,211 - -0.7 915,269 + -1.0 915,270 - -0.3 915,270 - +1.4 915,390 + -1.8 915,390 + +2.2 915,391 - +1.0 915,522 - +0.0 915,642 + -0.1 915,643 + -0.4 915,644 - -0.2 915,648 - +0.9 915,736 - +1.2 915,736 - +0.2 915,776 - -0.9 916,143 - -0.5 916,212 + +0.9 916,212 + +1.0 916,212 + +0.4 916,212 + -3.8 916,213 - -1.3 916,213 - -1.1 916,213 - +0.0
Or see this region's nucleotide sequence