Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24205 and RR42_RS24210 are separated by 123 nucleotides RR42_RS24210 and RR42_RS24215 are separated by 227 nucleotides RR42_RS24215 and RR42_RS24220 are separated by 707 nucleotides
RR42_RS24205: RR42_RS24205 - NADH:flavin oxidoreductase, at 756,871 to 758,013
_RS24205
RR42_RS24210: RR42_RS24210 - ketosteroid isomerase, at 758,137 to 758,547
_RS24210
RR42_RS24215: RR42_RS24215 - hypothetical protein, at 758,775 to 759,290
_RS24215
RR42_RS24220: RR42_RS24220 - gentisate 1,2-dioxygenase, at 759,998 to 760,951
_RS24220
Position (kb) 758
759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 757.845 kb on + strand, within RR42_RS24205 at 757.845 kb on + strand, within RR42_RS24205 at 757.846 kb on - strand, within RR42_RS24205 at 757.846 kb on - strand, within RR42_RS24205 at 757.846 kb on - strand, within RR42_RS24205 at 757.846 kb on - strand, within RR42_RS24205 at 757.898 kb on + strand, within RR42_RS24205 at 757.898 kb on + strand, within RR42_RS24205 at 757.898 kb on + strand, within RR42_RS24205 at 757.899 kb on - strand at 758.028 kb on - strand at 758.028 kb on - strand at 758.055 kb on + strand at 758.056 kb on - strand at 758.056 kb on - strand at 758.056 kb on - strand at 758.079 kb on + strand at 758.080 kb on - strand at 758.080 kb on - strand at 758.081 kb on + strand at 758.082 kb on - strand at 758.082 kb on - strand at 758.135 kb on + strand at 758.152 kb on - strand at 758.191 kb on + strand, within RR42_RS24210 at 758.191 kb on + strand, within RR42_RS24210 at 758.191 kb on + strand, within RR42_RS24210 at 758.192 kb on - strand, within RR42_RS24210 at 758.192 kb on - strand, within RR42_RS24210 at 758.239 kb on + strand, within RR42_RS24210 at 758.239 kb on + strand, within RR42_RS24210 at 758.239 kb on + strand, within RR42_RS24210 at 758.240 kb on - strand, within RR42_RS24210 at 758.240 kb on - strand, within RR42_RS24210 at 758.240 kb on - strand, within RR42_RS24210 at 758.240 kb on - strand, within RR42_RS24210 at 758.306 kb on + strand, within RR42_RS24210 at 758.307 kb on - strand, within RR42_RS24210 at 758.307 kb on - strand, within RR42_RS24210 at 758.351 kb on - strand, within RR42_RS24210 at 758.357 kb on + strand, within RR42_RS24210 at 758.358 kb on - strand, within RR42_RS24210 at 758.358 kb on - strand, within RR42_RS24210 at 758.478 kb on - strand, within RR42_RS24210 at 758.481 kb on + strand, within RR42_RS24210 at 758.482 kb on - strand, within RR42_RS24210 at 758.482 kb on - strand, within RR42_RS24210 at 758.482 kb on - strand, within RR42_RS24210 at 758.482 kb on - strand, within RR42_RS24210 at 758.482 kb on - strand, within RR42_RS24210 at 758.515 kb on + strand at 758.516 kb on - strand at 758.516 kb on - strand at 758.555 kb on - strand at 758.599 kb on + strand at 758.600 kb on - strand at 758.640 kb on + strand at 758.640 kb on + strand at 758.640 kb on + strand at 758.641 kb on - strand at 758.641 kb on - strand at 758.641 kb on - strand at 758.644 kb on + strand at 758.645 kb on - strand at 758.645 kb on - strand at 758.645 kb on - strand at 758.668 kb on + strand at 758.697 kb on + strand at 758.726 kb on + strand at 758.727 kb on - strand at 758.727 kb on - strand at 758.757 kb on + strand at 758.770 kb on + strand at 758.822 kb on - strand at 759.081 kb on + strand, within RR42_RS24215 at 759.234 kb on - strand, within RR42_RS24215 at 759.234 kb on - strand, within RR42_RS24215 at 759.309 kb on + strand at 759.310 kb on - strand at 759.341 kb on - strand at 759.366 kb on + strand at 759.367 kb on - strand at 759.424 kb on + strand at 759.424 kb on + strand at 759.424 kb on + strand at 759.424 kb on + strand at 759.425 kb on - strand at 759.425 kb on - strand at 759.425 kb on - strand at 759.548 kb on + strand at 759.548 kb on + strand at 759.548 kb on + strand at 759.548 kb on + strand at 759.548 kb on + strand at 759.549 kb on - strand at 759.549 kb on - strand at 759.549 kb on - strand at 759.549 kb on - strand at 759.549 kb on - strand at 759.720 kb on + strand at 759.721 kb on - strand at 759.721 kb on - strand at 759.721 kb on - strand at 759.750 kb on + strand at 759.840 kb on + strand at 759.868 kb on + strand at 759.868 kb on + strand at 759.868 kb on + strand at 759.868 kb on + strand at 759.869 kb on - strand at 759.869 kb on - strand at 759.869 kb on - strand at 759.915 kb on + strand at 759.997 kb on + strand at 759.998 kb on - strand at 759.998 kb on - strand at 760.008 kb on - strand at 760.008 kb on - strand at 760.008 kb on - strand at 760.038 kb on + strand at 760.038 kb on + strand at 760.106 kb on - strand, within RR42_RS24220 at 760.143 kb on - strand, within RR42_RS24220 at 760.185 kb on + strand, within RR42_RS24220 at 760.217 kb on - strand, within RR42_RS24220 at 760.278 kb on - strand, within RR42_RS24220 at 760.287 kb on + strand, within RR42_RS24220
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 757,845 + RR42_RS24205 0.85 +2.9 757,845 + RR42_RS24205 0.85 +0.8 757,846 - RR42_RS24205 0.85 -1.8 757,846 - RR42_RS24205 0.85 +0.0 757,846 - RR42_RS24205 0.85 -3.0 757,846 - RR42_RS24205 0.85 +0.0 757,898 + RR42_RS24205 0.90 -0.7 757,898 + RR42_RS24205 0.90 -0.3 757,898 + RR42_RS24205 0.90 -0.8 757,899 - +2.6 758,028 - +0.6 758,028 - +0.3 758,055 + -1.3 758,056 - +0.3 758,056 - -0.7 758,056 - -2.0 758,079 + +1.6 758,080 - +0.4 758,080 - -0.4 758,081 + -1.5 758,082 - +0.9 758,082 - -1.3 758,135 + +0.5 758,152 - +0.4 758,191 + RR42_RS24210 0.13 +0.6 758,191 + RR42_RS24210 0.13 +0.5 758,191 + RR42_RS24210 0.13 -2.6 758,192 - RR42_RS24210 0.13 +0.4 758,192 - RR42_RS24210 0.13 +0.4 758,239 + RR42_RS24210 0.25 +0.7 758,239 + RR42_RS24210 0.25 -0.6 758,239 + RR42_RS24210 0.25 +0.1 758,240 - RR42_RS24210 0.25 +0.6 758,240 - RR42_RS24210 0.25 +0.3 758,240 - RR42_RS24210 0.25 -0.5 758,240 - RR42_RS24210 0.25 -0.2 758,306 + RR42_RS24210 0.41 -0.5 758,307 - RR42_RS24210 0.41 +0.2 758,307 - RR42_RS24210 0.41 -1.8 758,351 - RR42_RS24210 0.52 -0.9 758,357 + RR42_RS24210 0.54 -0.2 758,358 - RR42_RS24210 0.54 +0.3 758,358 - RR42_RS24210 0.54 +0.4 758,478 - RR42_RS24210 0.83 +1.8 758,481 + RR42_RS24210 0.84 +0.1 758,482 - RR42_RS24210 0.84 +2.3 758,482 - RR42_RS24210 0.84 -0.8 758,482 - RR42_RS24210 0.84 +0.8 758,482 - RR42_RS24210 0.84 +0.7 758,482 - RR42_RS24210 0.84 -1.5 758,515 + +0.6 758,516 - -0.6 758,516 - -0.3 758,555 - -0.1 758,599 + -0.3 758,600 - -0.8 758,640 + +0.5 758,640 + -1.5 758,640 + +2.3 758,641 - -0.5 758,641 - -1.5 758,641 - -1.0 758,644 + +1.1 758,645 - -2.0 758,645 - +0.2 758,645 - -0.2 758,668 + -0.6 758,697 + -0.4 758,726 + -0.2 758,727 - +0.5 758,727 - +0.1 758,757 + +0.9 758,770 + -2.2 758,822 - +1.1 759,081 + RR42_RS24215 0.59 +0.1 759,234 - RR42_RS24215 0.89 -0.4 759,234 - RR42_RS24215 0.89 -1.3 759,309 + +1.5 759,310 - -2.3 759,341 - +0.3 759,366 + -2.3 759,367 - -0.4 759,424 + -2.3 759,424 + +0.7 759,424 + -0.4 759,424 + -0.6 759,425 - -0.0 759,425 - +0.3 759,425 - -0.7 759,548 + +0.5 759,548 + -0.2 759,548 + +1.0 759,548 + +0.3 759,548 + -0.0 759,549 - -2.5 759,549 - -0.7 759,549 - +0.1 759,549 - -0.6 759,549 - +1.4 759,720 + +1.5 759,721 - -0.8 759,721 - +0.4 759,721 - -0.3 759,750 + -0.6 759,840 + -0.4 759,868 + -0.1 759,868 + -1.3 759,868 + -1.7 759,868 + +1.1 759,869 - -0.3 759,869 - +1.3 759,869 - -2.4 759,915 + -0.0 759,997 + +0.1 759,998 - -0.1 759,998 - +1.3 760,008 - +0.7 760,008 - +0.8 760,008 - +0.5 760,038 + -3.4 760,038 + -1.0 760,106 - RR42_RS24220 0.11 +0.4 760,143 - RR42_RS24220 0.15 +0.0 760,185 + RR42_RS24220 0.20 -1.4 760,217 - RR42_RS24220 0.23 +2.7 760,278 - RR42_RS24220 0.29 -1.5 760,287 + RR42_RS24220 0.30 -0.9
Or see this region's nucleotide sequence