Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23070

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23065 and RR42_RS23070 are separated by 162 nucleotidesRR42_RS23070 and RR42_RS23075 are separated by 31 nucleotides RR42_RS23065: RR42_RS23065 - L-rhamnose 1-epimerase, at 509,085 to 510,260 _RS23065 RR42_RS23070: RR42_RS23070 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 510,423 to 511,454 _RS23070 RR42_RS23075: RR42_RS23075 - ABC transporter substrate-binding protein, at 511,486 to 512,451 _RS23075 Position (kb) 510 511 512Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 509.443 kb on + strand, within RR42_RS23065at 509.443 kb on + strand, within RR42_RS23065at 509.506 kb on + strand, within RR42_RS23065at 509.609 kb on + strand, within RR42_RS23065at 509.610 kb on - strand, within RR42_RS23065at 509.611 kb on + strand, within RR42_RS23065at 509.611 kb on + strand, within RR42_RS23065at 509.611 kb on + strand, within RR42_RS23065at 509.611 kb on + strand, within RR42_RS23065at 509.611 kb on + strand, within RR42_RS23065at 509.612 kb on - strand, within RR42_RS23065at 509.612 kb on - strand, within RR42_RS23065at 509.612 kb on - strand, within RR42_RS23065at 509.612 kb on - strand, within RR42_RS23065at 509.612 kb on - strand, within RR42_RS23065at 509.612 kb on - strand, within RR42_RS23065at 509.612 kb on - strand, within RR42_RS23065at 509.612 kb on - strand, within RR42_RS23065at 509.755 kb on + strand, within RR42_RS23065at 509.755 kb on + strand, within RR42_RS23065at 509.756 kb on - strand, within RR42_RS23065at 509.801 kb on - strand, within RR42_RS23065at 509.801 kb on - strand, within RR42_RS23065at 509.815 kb on + strand, within RR42_RS23065at 509.815 kb on + strand, within RR42_RS23065at 509.815 kb on + strand, within RR42_RS23065at 509.815 kb on + strand, within RR42_RS23065at 509.816 kb on - strand, within RR42_RS23065at 509.816 kb on - strand, within RR42_RS23065at 509.816 kb on - strand, within RR42_RS23065at 509.965 kb on + strand, within RR42_RS23065at 509.965 kb on + strand, within RR42_RS23065at 509.966 kb on - strand, within RR42_RS23065at 509.983 kb on + strand, within RR42_RS23065at 509.984 kb on - strand, within RR42_RS23065at 509.984 kb on - strand, within RR42_RS23065at 510.028 kb on + strand, within RR42_RS23065at 510.029 kb on - strand, within RR42_RS23065at 510.029 kb on - strand, within RR42_RS23065at 510.424 kb on + strandat 510.634 kb on + strand, within RR42_RS23070at 510.635 kb on - strand, within RR42_RS23070at 510.635 kb on - strand, within RR42_RS23070at 510.635 kb on - strand, within RR42_RS23070at 510.635 kb on - strand, within RR42_RS23070at 511.040 kb on + strand, within RR42_RS23070at 511.154 kb on - strand, within RR42_RS23070at 511.573 kb on - strandat 511.694 kb on + strand, within RR42_RS23075at 511.695 kb on - strand, within RR42_RS23075at 511.821 kb on + strand, within RR42_RS23075at 511.821 kb on + strand, within RR42_RS23075at 511.822 kb on - strand, within RR42_RS23075at 511.907 kb on + strand, within RR42_RS23075at 511.908 kb on - strand, within RR42_RS23075at 511.908 kb on - strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.993 kb on - strand, within RR42_RS23075at 512.221 kb on - strand, within RR42_RS23075at 512.235 kb on + strand, within RR42_RS23075at 512.235 kb on + strand, within RR42_RS23075at 512.236 kb on - strand, within RR42_RS23075at 512.236 kb on - strand, within RR42_RS23075at 512.236 kb on - strand, within RR42_RS23075at 512.385 kb on - strandat 512.452 kb on + strandat 512.452 kb on + strandat 512.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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509,443 + RR42_RS23065 0.30 -1.3
509,443 + RR42_RS23065 0.30 -1.0
509,506 + RR42_RS23065 0.36 +0.1
509,609 + RR42_RS23065 0.45 -0.9
509,610 - RR42_RS23065 0.45 +0.1
509,611 + RR42_RS23065 0.45 +1.3
509,611 + RR42_RS23065 0.45 +0.3
509,611 + RR42_RS23065 0.45 -0.2
509,611 + RR42_RS23065 0.45 +0.2
509,611 + RR42_RS23065 0.45 -1.5
509,612 - RR42_RS23065 0.45 -1.1
509,612 - RR42_RS23065 0.45 -0.3
509,612 - RR42_RS23065 0.45 -0.4
509,612 - RR42_RS23065 0.45 +1.9
509,612 - RR42_RS23065 0.45 +1.3
509,612 - RR42_RS23065 0.45 -0.4
509,612 - RR42_RS23065 0.45 -1.1
509,612 - RR42_RS23065 0.45 -0.1
509,755 + RR42_RS23065 0.57 +0.0
509,755 + RR42_RS23065 0.57 +0.7
509,756 - RR42_RS23065 0.57 -0.3
509,801 - RR42_RS23065 0.61 -0.2
509,801 - RR42_RS23065 0.61 +1.0
509,815 + RR42_RS23065 0.62 -0.3
509,815 + RR42_RS23065 0.62 +0.3
509,815 + RR42_RS23065 0.62 +1.9
509,815 + RR42_RS23065 0.62 +1.3
509,816 - RR42_RS23065 0.62 -0.7
509,816 - RR42_RS23065 0.62 -0.7
509,816 - RR42_RS23065 0.62 -2.9
509,965 + RR42_RS23065 0.75 +1.1
509,965 + RR42_RS23065 0.75 -1.6
509,966 - RR42_RS23065 0.75 +0.3
509,983 + RR42_RS23065 0.76 +1.6
509,984 - RR42_RS23065 0.76 +0.9
509,984 - RR42_RS23065 0.76 -3.3
510,028 + RR42_RS23065 0.80 +2.3
510,029 - RR42_RS23065 0.80 +0.4
510,029 - RR42_RS23065 0.80 -2.1
510,424 + -1.7
510,634 + RR42_RS23070 0.20 +0.4
510,635 - RR42_RS23070 0.21 +0.0
510,635 - RR42_RS23070 0.21 -0.4
510,635 - RR42_RS23070 0.21 -0.4
510,635 - RR42_RS23070 0.21 -1.2
511,040 + RR42_RS23070 0.60 -0.9
511,154 - RR42_RS23070 0.71 -1.9
511,573 - +0.5
511,694 + RR42_RS23075 0.22 +0.7
511,695 - RR42_RS23075 0.22 -1.9
511,821 + RR42_RS23075 0.35 +0.7
511,821 + RR42_RS23075 0.35 +0.1
511,822 - RR42_RS23075 0.35 +0.5
511,907 + RR42_RS23075 0.44 +0.3
511,908 - RR42_RS23075 0.44 +0.6
511,908 - RR42_RS23075 0.44 +0.4
511,992 + RR42_RS23075 0.52 -0.3
511,992 + RR42_RS23075 0.52 -1.5
511,992 + RR42_RS23075 0.52 -0.7
511,992 + RR42_RS23075 0.52 +0.0
511,993 - RR42_RS23075 0.52 +2.4
512,221 - RR42_RS23075 0.76 +1.6
512,235 + RR42_RS23075 0.78 -0.5
512,235 + RR42_RS23075 0.78 -2.1
512,236 - RR42_RS23075 0.78 +0.3
512,236 - RR42_RS23075 0.78 +0.6
512,236 - RR42_RS23075 0.78 -0.2
512,385 - +0.4
512,452 + +0.4
512,452 + -0.6
512,452 + +3.1

Or see this region's nucleotide sequence