Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22355

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22345 and RR42_RS22350 are separated by 150 nucleotidesRR42_RS22350 and RR42_RS22355 are separated by 211 nucleotidesRR42_RS22355 and RR42_RS22360 are separated by 263 nucleotides RR42_RS22345: RR42_RS22345 - UDP-N-acetylmuramate--alanine ligase, at 354,042 to 354,395 _RS22345 RR42_RS22350: RR42_RS22350 - transporter, at 354,546 to 354,974 _RS22350 RR42_RS22355: RR42_RS22355 - ModE family transcriptional regulator, at 355,186 to 355,512 _RS22355 RR42_RS22360: RR42_RS22360 - hypothetical protein, at 355,776 to 355,985 _RS22360 Position (kb) 355 356Strain fitness (log2 ratio) -3 -2 -1 0 1at 354.206 kb on + strand, within RR42_RS22345at 354.207 kb on - strand, within RR42_RS22345at 354.207 kb on - strand, within RR42_RS22345at 354.318 kb on + strand, within RR42_RS22345at 354.319 kb on - strand, within RR42_RS22345at 354.381 kb on + strandat 354.382 kb on - strandat 354.458 kb on + strandat 354.459 kb on - strandat 354.578 kb on + strandat 355.025 kb on - strandat 355.041 kb on + strandat 355.041 kb on + strandat 355.041 kb on + strandat 355.041 kb on + strandat 355.042 kb on - strandat 355.042 kb on - strandat 355.042 kb on - strandat 355.071 kb on - strandat 355.112 kb on - strandat 355.432 kb on + strand, within RR42_RS22355at 355.449 kb on - strand, within RR42_RS22355at 355.524 kb on + strandat 355.525 kb on - strandat 355.643 kb on - strandat 355.643 kb on - strandat 355.807 kb on + strand, within RR42_RS22360at 355.807 kb on + strand, within RR42_RS22360at 355.975 kb on + strandat 355.976 kb on - strandat 356.006 kb on + strandat 356.006 kb on + strandat 356.007 kb on - strandat 356.087 kb on - strandat 356.218 kb on - strandat 356.218 kb on - strandat 356.501 kb on + strandat 356.501 kb on + strandat 356.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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354,206 + RR42_RS22345 0.46 -0.8
354,207 - RR42_RS22345 0.47 -1.8
354,207 - RR42_RS22345 0.47 +0.4
354,318 + RR42_RS22345 0.78 -2.2
354,319 - RR42_RS22345 0.78 +1.2
354,381 + -2.3
354,382 - +0.2
354,458 + +0.1
354,459 - -2.8
354,578 + -0.4
355,025 - +1.2
355,041 + +0.7
355,041 + +0.4
355,041 + +0.9
355,041 + -1.2
355,042 - +0.2
355,042 - +0.9
355,042 - +0.3
355,071 - -0.2
355,112 - -2.8
355,432 + RR42_RS22355 0.75 -0.7
355,449 - RR42_RS22355 0.80 -2.8
355,524 + +1.0
355,525 - +0.2
355,643 - -1.7
355,643 - -0.6
355,807 + RR42_RS22360 0.15 -0.1
355,807 + RR42_RS22360 0.15 -0.4
355,975 + -0.2
355,976 - +0.7
356,006 + -1.2
356,006 + +0.0
356,007 - +1.4
356,087 - -0.9
356,218 - -1.8
356,218 - +0.5
356,501 + -1.2
356,501 + -0.7
356,502 - +1.4

Or see this region's nucleotide sequence