Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22030

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22025 and RR42_RS22030 are separated by 164 nucleotidesRR42_RS22030 and RR42_RS22035 overlap by 4 nucleotides RR42_RS22025: RR42_RS22025 - AraC family transcriptional regulator, at 274,113 to 275,090 _RS22025 RR42_RS22030: RR42_RS22030 - hypothetical protein, at 275,255 to 275,689 _RS22030 RR42_RS22035: RR42_RS22035 - ATPase, at 275,686 to 278,376 _RS22035 Position (kb) 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 274.275 kb on - strand, within RR42_RS22025at 274.275 kb on - strand, within RR42_RS22025at 274.279 kb on - strand, within RR42_RS22025at 274.654 kb on + strand, within RR42_RS22025at 274.654 kb on + strand, within RR42_RS22025at 274.655 kb on - strand, within RR42_RS22025at 274.655 kb on - strand, within RR42_RS22025at 274.788 kb on + strand, within RR42_RS22025at 274.788 kb on + strand, within RR42_RS22025at 274.875 kb on + strand, within RR42_RS22025at 275.116 kb on + strandat 275.434 kb on - strand, within RR42_RS22030at 275.453 kb on + strand, within RR42_RS22030at 275.454 kb on - strand, within RR42_RS22030at 275.496 kb on + strand, within RR42_RS22030at 275.496 kb on + strand, within RR42_RS22030at 276.312 kb on - strand, within RR42_RS22035at 276.312 kb on - strand, within RR42_RS22035at 276.366 kb on - strand, within RR42_RS22035at 276.618 kb on + strand, within RR42_RS22035

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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274,275 - RR42_RS22025 0.17 +1.4
274,275 - RR42_RS22025 0.17 -3.0
274,279 - RR42_RS22025 0.17 -0.0
274,654 + RR42_RS22025 0.55 +0.2
274,654 + RR42_RS22025 0.55 +0.0
274,655 - RR42_RS22025 0.55 -0.2
274,655 - RR42_RS22025 0.55 -0.3
274,788 + RR42_RS22025 0.69 +2.4
274,788 + RR42_RS22025 0.69 -1.0
274,875 + RR42_RS22025 0.78 +0.2
275,116 + -1.4
275,434 - RR42_RS22030 0.41 -0.5
275,453 + RR42_RS22030 0.46 -0.6
275,454 - RR42_RS22030 0.46 +3.4
275,496 + RR42_RS22030 0.55 -1.5
275,496 + RR42_RS22030 0.55 -0.9
276,312 - RR42_RS22035 0.23 +0.4
276,312 - RR42_RS22035 0.23 +0.2
276,366 - RR42_RS22035 0.25 +0.4
276,618 + RR42_RS22035 0.35 -0.2

Or see this region's nucleotide sequence