Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21860 and RR42_RS21865 are separated by 155 nucleotides RR42_RS21865 and RR42_RS21870 are separated by 165 nucleotides
RR42_RS21860: RR42_RS21860 - hypothetical protein, at 230,852 to 231,661
_RS21860
RR42_RS21865: RR42_RS21865 - 3-ketoacyl-ACP reductase, at 231,817 to 232,560
_RS21865
RR42_RS21870: RR42_RS21870 - transcriptional regulator, at 232,726 to 233,607
_RS21870
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 230.873 kb on + strand at 230.873 kb on + strand at 230.873 kb on + strand at 230.874 kb on - strand at 230.874 kb on - strand at 230.874 kb on - strand at 230.874 kb on - strand at 230.874 kb on - strand at 230.875 kb on + strand at 231.114 kb on + strand, within RR42_RS21860 at 231.114 kb on + strand, within RR42_RS21860 at 231.114 kb on + strand, within RR42_RS21860 at 231.114 kb on + strand, within RR42_RS21860 at 231.114 kb on + strand, within RR42_RS21860 at 231.115 kb on - strand, within RR42_RS21860 at 231.115 kb on - strand, within RR42_RS21860 at 231.115 kb on - strand, within RR42_RS21860 at 231.129 kb on + strand, within RR42_RS21860 at 231.130 kb on - strand, within RR42_RS21860 at 231.191 kb on + strand, within RR42_RS21860 at 231.191 kb on + strand, within RR42_RS21860 at 231.203 kb on - strand, within RR42_RS21860 at 231.418 kb on - strand, within RR42_RS21860 at 231.587 kb on + strand at 231.704 kb on + strand at 231.704 kb on + strand at 231.704 kb on + strand at 231.718 kb on + strand at 232.097 kb on + strand, within RR42_RS21865 at 232.097 kb on + strand, within RR42_RS21865 at 232.097 kb on + strand, within RR42_RS21865 at 232.098 kb on - strand, within RR42_RS21865 at 232.107 kb on - strand, within RR42_RS21865 at 232.235 kb on + strand, within RR42_RS21865 at 232.235 kb on + strand, within RR42_RS21865 at 232.235 kb on + strand, within RR42_RS21865 at 232.236 kb on - strand, within RR42_RS21865 at 232.236 kb on - strand, within RR42_RS21865 at 232.236 kb on - strand, within RR42_RS21865 at 232.448 kb on + strand at 232.448 kb on + strand, within RR42_RS21865 at 232.449 kb on - strand, within RR42_RS21865 at 232.449 kb on - strand, within RR42_RS21865 at 232.449 kb on - strand, within RR42_RS21865 at 232.449 kb on - strand, within RR42_RS21865 at 232.579 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.591 kb on - strand at 232.591 kb on - strand at 232.591 kb on - strand at 232.636 kb on - strand at 232.921 kb on + strand, within RR42_RS21870 at 233.230 kb on + strand, within RR42_RS21870 at 233.230 kb on + strand, within RR42_RS21870 at 233.293 kb on + strand, within RR42_RS21870 at 233.293 kb on + strand, within RR42_RS21870 at 233.293 kb on + strand, within RR42_RS21870 at 233.293 kb on + strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.401 kb on + strand, within RR42_RS21870 at 233.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 230,873 + -0.1 230,873 + -0.9 230,873 + -1.6 230,874 - -0.5 230,874 - -0.4 230,874 - -1.4 230,874 - +1.0 230,874 - -0.4 230,875 + +0.5 231,114 + RR42_RS21860 0.32 -0.7 231,114 + RR42_RS21860 0.32 -0.1 231,114 + RR42_RS21860 0.32 +0.6 231,114 + RR42_RS21860 0.32 -2.1 231,114 + RR42_RS21860 0.32 -1.0 231,115 - RR42_RS21860 0.32 +1.6 231,115 - RR42_RS21860 0.32 +0.0 231,115 - RR42_RS21860 0.32 +0.5 231,129 + RR42_RS21860 0.34 -0.3 231,130 - RR42_RS21860 0.34 +1.7 231,191 + RR42_RS21860 0.42 -0.4 231,191 + RR42_RS21860 0.42 +1.2 231,203 - RR42_RS21860 0.43 -1.6 231,418 - RR42_RS21860 0.70 +0.3 231,587 + -2.1 231,704 + +0.9 231,704 + +0.2 231,704 + -0.9 231,718 + -0.5 232,097 + RR42_RS21865 0.38 +0.1 232,097 + RR42_RS21865 0.38 +1.4 232,097 + RR42_RS21865 0.38 +0.5 232,098 - RR42_RS21865 0.38 -2.0 232,107 - RR42_RS21865 0.39 +1.4 232,235 + RR42_RS21865 0.56 -0.1 232,235 + RR42_RS21865 0.56 -1.1 232,235 + RR42_RS21865 0.56 -3.0 232,236 - RR42_RS21865 0.56 +0.6 232,236 - RR42_RS21865 0.56 +0.9 232,236 - RR42_RS21865 0.56 -1.2 232,448 + +1.4 232,448 + RR42_RS21865 0.85 +0.7 232,449 - RR42_RS21865 0.85 +1.0 232,449 - RR42_RS21865 0.85 -0.4 232,449 - RR42_RS21865 0.85 +1.5 232,449 - RR42_RS21865 0.85 +0.1 232,579 + -0.4 232,590 + +1.2 232,590 + +1.2 232,590 + -3.1 232,590 + -0.9 232,590 + +1.0 232,590 + +0.8 232,590 + +0.6 232,590 + +0.2 232,590 + +0.1 232,591 - +2.0 232,591 - -1.5 232,591 - +0.7 232,636 - +0.5 232,921 + RR42_RS21870 0.22 -0.8 233,230 + RR42_RS21870 0.57 -1.5 233,230 + RR42_RS21870 0.57 -0.0 233,293 + RR42_RS21870 0.64 -0.6 233,293 + RR42_RS21870 0.64 +1.2 233,293 + RR42_RS21870 0.64 -0.3 233,293 + RR42_RS21870 0.64 +0.1 233,294 - RR42_RS21870 0.64 +1.7 233,294 - RR42_RS21870 0.64 +0.1 233,294 - RR42_RS21870 0.64 -0.3 233,294 - RR42_RS21870 0.64 +0.1 233,294 - RR42_RS21870 0.64 +0.1 233,294 - RR42_RS21870 0.64 +0.6 233,401 + RR42_RS21870 0.77 -0.6 233,555 + +0.0
Or see this region's nucleotide sequence