Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21720 and RR42_RS21725 are separated by 11 nucleotides RR42_RS21725 and RR42_RS21730 are separated by 67 nucleotides
RR42_RS21720: RR42_RS21720 - acetoin catabolism protein X, at 201,745 to 202,869
_RS21720
RR42_RS21725: RR42_RS21725 - ABC transporter substrate-binding protein, at 202,881 to 203,885
_RS21725
RR42_RS21730: RR42_RS21730 - pyruvate dehydrogenase subunit beta, at 203,953 to 204,969
_RS21730
Position (kb) 202
203
204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 202.414 kb on + strand, within RR42_RS21720 at 202.414 kb on + strand, within RR42_RS21720 at 202.415 kb on - strand, within RR42_RS21720 at 203.037 kb on + strand, within RR42_RS21725 at 203.037 kb on + strand, within RR42_RS21725 at 203.173 kb on - strand, within RR42_RS21725 at 203.173 kb on - strand, within RR42_RS21725 at 203.219 kb on + strand, within RR42_RS21725 at 203.219 kb on + strand, within RR42_RS21725 at 203.219 kb on + strand, within RR42_RS21725 at 203.487 kb on + strand, within RR42_RS21725 at 203.487 kb on + strand, within RR42_RS21725 at 203.487 kb on + strand, within RR42_RS21725 at 203.488 kb on - strand, within RR42_RS21725 at 203.637 kb on + strand, within RR42_RS21725 at 203.871 kb on + strand at 203.871 kb on + strand at 203.872 kb on - strand at 203.872 kb on - strand at 203.872 kb on - strand at 203.883 kb on + strand at 203.883 kb on + strand at 203.884 kb on - strand at 203.920 kb on + strand at 203.920 kb on + strand at 203.921 kb on - strand at 203.921 kb on - strand at 203.921 kb on - strand at 203.921 kb on - strand at 203.921 kb on - strand at 203.967 kb on - strand at 204.118 kb on + strand, within RR42_RS21730 at 204.119 kb on - strand, within RR42_RS21730 at 204.169 kb on + strand, within RR42_RS21730 at 204.169 kb on + strand, within RR42_RS21730 at 204.170 kb on - strand, within RR42_RS21730 at 204.289 kb on + strand, within RR42_RS21730 at 204.290 kb on - strand, within RR42_RS21730 at 204.400 kb on - strand, within RR42_RS21730 at 204.436 kb on + strand, within RR42_RS21730 at 204.436 kb on + strand, within RR42_RS21730 at 204.436 kb on + strand, within RR42_RS21730 at 204.544 kb on + strand, within RR42_RS21730
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 202,414 + RR42_RS21720 0.59 +1.1 202,414 + RR42_RS21720 0.59 -0.2 202,415 - RR42_RS21720 0.60 -0.9 203,037 + RR42_RS21725 0.16 +1.8 203,037 + RR42_RS21725 0.16 -0.7 203,173 - RR42_RS21725 0.29 -0.9 203,173 - RR42_RS21725 0.29 -1.8 203,219 + RR42_RS21725 0.34 +0.1 203,219 + RR42_RS21725 0.34 +1.2 203,219 + RR42_RS21725 0.34 -1.7 203,487 + RR42_RS21725 0.60 -1.8 203,487 + RR42_RS21725 0.60 +0.6 203,487 + RR42_RS21725 0.60 -0.0 203,488 - RR42_RS21725 0.60 -0.3 203,637 + RR42_RS21725 0.75 -2.6 203,871 + -0.3 203,871 + -1.3 203,872 - -1.7 203,872 - -0.1 203,872 - -0.3 203,883 + +0.5 203,883 + +0.1 203,884 - -0.6 203,920 + -0.7 203,920 + +0.5 203,921 - -3.0 203,921 - +2.0 203,921 - -0.6 203,921 - +0.3 203,921 - +1.2 203,967 - +0.4 204,118 + RR42_RS21730 0.16 +0.0 204,119 - RR42_RS21730 0.16 -0.0 204,169 + RR42_RS21730 0.21 +0.5 204,169 + RR42_RS21730 0.21 +1.4 204,170 - RR42_RS21730 0.21 +1.2 204,289 + RR42_RS21730 0.33 -0.3 204,290 - RR42_RS21730 0.33 +1.5 204,400 - RR42_RS21730 0.44 +0.5 204,436 + RR42_RS21730 0.47 -0.1 204,436 + RR42_RS21730 0.47 -0.5 204,436 + RR42_RS21730 0.47 -0.2 204,544 + RR42_RS21730 0.58 +2.0
Or see this region's nucleotide sequence