Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21415

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21410 and RR42_RS21415 are separated by 144 nucleotidesRR42_RS21415 and RR42_RS21420 are separated by 160 nucleotides RR42_RS21410: RR42_RS21410 - DNA-binding protein, at 133,775 to 134,095 _RS21410 RR42_RS21415: RR42_RS21415 - hypothetical protein, at 134,240 to 134,638 _RS21415 RR42_RS21420: RR42_RS21420 - acyl-CoA dehydrogenase, at 134,799 to 135,956 _RS21420 Position (kb) 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.275 kb on + strandat 133.275 kb on + strandat 133.407 kb on + strandat 133.407 kb on + strandat 133.407 kb on + strandat 133.408 kb on - strandat 133.541 kb on + strandat 133.542 kb on - strandat 133.543 kb on + strandat 133.543 kb on + strandat 133.543 kb on + strandat 133.543 kb on + strandat 133.544 kb on - strandat 133.544 kb on - strandat 133.544 kb on - strandat 133.544 kb on - strandat 133.551 kb on + strandat 133.551 kb on + strandat 133.673 kb on - strandat 133.720 kb on + strandat 133.721 kb on - strandat 133.784 kb on + strandat 133.784 kb on + strandat 133.785 kb on - strandat 133.861 kb on + strand, within RR42_RS21410at 133.862 kb on - strand, within RR42_RS21410at 133.862 kb on - strand, within RR42_RS21410at 133.892 kb on + strand, within RR42_RS21410at 133.892 kb on + strand, within RR42_RS21410at 133.892 kb on + strand, within RR42_RS21410at 133.893 kb on - strand, within RR42_RS21410at 133.893 kb on - strand, within RR42_RS21410at 133.997 kb on + strand, within RR42_RS21410at 134.060 kb on - strand, within RR42_RS21410at 134.321 kb on + strand, within RR42_RS21415at 134.321 kb on + strand, within RR42_RS21415at 134.420 kb on + strand, within RR42_RS21415at 134.420 kb on + strand, within RR42_RS21415at 134.421 kb on - strand, within RR42_RS21415at 134.421 kb on - strand, within RR42_RS21415at 134.422 kb on + strand, within RR42_RS21415at 134.422 kb on + strand, within RR42_RS21415at 134.423 kb on - strand, within RR42_RS21415at 134.423 kb on - strand, within RR42_RS21415at 134.423 kb on - strand, within RR42_RS21415at 134.423 kb on - strand, within RR42_RS21415at 134.606 kb on - strandat 134.707 kb on - strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.756 kb on - strandat 134.756 kb on - strandat 134.756 kb on - strandat 134.756 kb on - strandat 134.756 kb on - strandat 134.970 kb on + strand, within RR42_RS21420at 134.970 kb on + strand, within RR42_RS21420at 134.971 kb on - strand, within RR42_RS21420at 134.971 kb on - strand, within RR42_RS21420at 134.971 kb on - strand, within RR42_RS21420at 135.015 kb on + strand, within RR42_RS21420at 135.015 kb on + strand, within RR42_RS21420at 135.015 kb on + strand, within RR42_RS21420at 135.016 kb on - strand, within RR42_RS21420at 135.016 kb on - strand, within RR42_RS21420at 135.016 kb on - strand, within RR42_RS21420at 135.123 kb on + strand, within RR42_RS21420at 135.123 kb on + strand, within RR42_RS21420at 135.237 kb on + strand, within RR42_RS21420at 135.237 kb on + strand, within RR42_RS21420at 135.238 kb on - strand, within RR42_RS21420at 135.238 kb on - strand, within RR42_RS21420at 135.293 kb on + strand, within RR42_RS21420at 135.530 kb on + strand, within RR42_RS21420at 135.531 kb on - strand, within RR42_RS21420at 135.570 kb on - strand, within RR42_RS21420at 135.585 kb on + strand, within RR42_RS21420at 135.586 kb on - strand, within RR42_RS21420at 135.586 kb on - strand, within RR42_RS21420

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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133,275 + -0.5
133,275 + -0.1
133,407 + -0.4
133,407 + -1.0
133,407 + +0.7
133,408 - -1.5
133,541 + -1.2
133,542 - +1.4
133,543 + +0.3
133,543 + -2.5
133,543 + -0.1
133,543 + -0.9
133,544 - +2.2
133,544 - -0.9
133,544 - -0.9
133,544 - +0.8
133,551 + +0.2
133,551 + +0.2
133,673 - -1.4
133,720 + +1.7
133,721 - +1.4
133,784 + +0.7
133,784 + -0.1
133,785 - +2.2
133,861 + RR42_RS21410 0.27 -0.4
133,862 - RR42_RS21410 0.27 +0.6
133,862 - RR42_RS21410 0.27 +1.7
133,892 + RR42_RS21410 0.36 -0.2
133,892 + RR42_RS21410 0.36 +0.4
133,892 + RR42_RS21410 0.36 +0.4
133,893 - RR42_RS21410 0.37 -1.9
133,893 - RR42_RS21410 0.37 -0.4
133,997 + RR42_RS21410 0.69 +0.4
134,060 - RR42_RS21410 0.89 +2.0
134,321 + RR42_RS21415 0.20 -1.9
134,321 + RR42_RS21415 0.20 +1.1
134,420 + RR42_RS21415 0.45 +0.4
134,420 + RR42_RS21415 0.45 -0.5
134,421 - RR42_RS21415 0.45 +2.4
134,421 - RR42_RS21415 0.45 -1.3
134,422 + RR42_RS21415 0.46 -0.2
134,422 + RR42_RS21415 0.46 +0.7
134,423 - RR42_RS21415 0.46 +1.3
134,423 - RR42_RS21415 0.46 -0.2
134,423 - RR42_RS21415 0.46 -1.7
134,423 - RR42_RS21415 0.46 -0.5
134,606 - +0.3
134,707 - +0.6
134,755 + +0.9
134,755 + +0.0
134,755 + +0.7
134,755 + -2.4
134,755 + +0.4
134,755 + +1.4
134,755 + -0.4
134,755 + +2.0
134,756 - -0.7
134,756 - +0.8
134,756 - -1.9
134,756 - -0.3
134,756 - -0.7
134,970 + RR42_RS21420 0.15 -2.1
134,970 + RR42_RS21420 0.15 +0.3
134,971 - RR42_RS21420 0.15 -1.2
134,971 - RR42_RS21420 0.15 -2.1
134,971 - RR42_RS21420 0.15 -1.6
135,015 + RR42_RS21420 0.19 +0.6
135,015 + RR42_RS21420 0.19 -1.3
135,015 + RR42_RS21420 0.19 -1.3
135,016 - RR42_RS21420 0.19 -0.2
135,016 - RR42_RS21420 0.19 +0.4
135,016 - RR42_RS21420 0.19 -0.4
135,123 + RR42_RS21420 0.28 -0.1
135,123 + RR42_RS21420 0.28 +0.8
135,237 + RR42_RS21420 0.38 +0.1
135,237 + RR42_RS21420 0.38 -0.3
135,238 - RR42_RS21420 0.38 -1.9
135,238 - RR42_RS21420 0.38 -0.6
135,293 + RR42_RS21420 0.43 -1.0
135,530 + RR42_RS21420 0.63 -3.0
135,531 - RR42_RS21420 0.63 -0.2
135,570 - RR42_RS21420 0.67 -1.8
135,585 + RR42_RS21420 0.68 +1.0
135,586 - RR42_RS21420 0.68 -0.1
135,586 - RR42_RS21420 0.68 +0.9

Or see this region's nucleotide sequence