Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20420

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
4,421,937	-		RR42_RS20415	0.56	-0.3
4,421,937	-		RR42_RS20415	0.56	+0.4
4,421,965	+		RR42_RS20415	0.58	+0.7
4,421,966	-		RR42_RS20415	0.58	+1.9
4,421,966	-		RR42_RS20415	0.58	-0.3
4,421,966	-		RR42_RS20415	0.58	-1.5
4,421,966	-		RR42_RS20415	0.58	-0.6
4,422,091	+		RR42_RS20415	0.69	+1.7
4,422,091	+		RR42_RS20415	0.69	-1.5
4,422,091	+		RR42_RS20415	0.69	+0.7
4,422,092	-		RR42_RS20415	0.69	+0.5
4,422,092	-		RR42_RS20415	0.69	-0.5
4,422,092	-		RR42_RS20415	0.69	-0.2
4,422,094	+		RR42_RS20415	0.69	+0.3
4,422,095	-		RR42_RS20415	0.69	-0.3
4,422,095	-		RR42_RS20415	0.69	+0.9
4,422,095	-		RR42_RS20415	0.69	-0.7
4,422,095	-		RR42_RS20415	0.69	-0.5
4,422,095	-		RR42_RS20415	0.69	-0.1
4,422,250	+		RR42_RS20415	0.83	-1.5
4,422,250	+		RR42_RS20415	0.83	-0.9
4,422,251	-		RR42_RS20415	0.83	+0.1
4,422,251	-		RR42_RS20415	0.83	-2.3
4,422,251	-		RR42_RS20415	0.83	-0.3
4,422,251	-		RR42_RS20415	0.83	-1.4
4,422,251	-		RR42_RS20415	0.83	+1.5
4,422,458	-				+0.8
4,422,458	-				-1.1
4,422,573	+				-1.1
4,422,666	+				-0.9
4,422,666	+				+0.0
4,422,666	+				+0.3
4,422,666	+				-2.4
4,422,666	+				-0.3
4,422,666	+				-0.2
4,422,666	+				-0.9
4,422,667	-				-0.3
4,422,667	-				+0.5
4,422,668	+				-0.2
4,422,745	+				+0.7
4,422,745	+				-1.0
4,422,777	+				-0.9
4,422,777	+				+0.2
4,422,778	-				-0.5
4,422,778	-				-0.4
4,422,778	-				+1.5
4,422,819	+				-2.7
4,422,860	-				+0.1
4,422,920	+				-0.8
4,422,920	+				-0.1
4,422,920	+				-0.7
4,422,920	+				+0.9
4,422,920	+				-1.6
4,422,921	-				-0.8
4,422,921	-				-0.2
4,423,277	+		RR42_RS20420	0.21	-0.9
4,423,277	+		RR42_RS20420	0.21	-1.8
4,423,488	+		RR42_RS20420	0.33	-0.8
4,423,488	+		RR42_RS20420	0.33	+0.5
4,423,488	+		RR42_RS20420	0.33	-0.5
4,423,489	-		RR42_RS20420	0.33	-1.9
4,423,489	-		RR42_RS20420	0.33	-0.0
4,423,489	-		RR42_RS20420	0.33	+0.4
4,423,489	-		RR42_RS20420	0.33	-1.5
4,423,552	-		RR42_RS20420	0.36	-0.5
4,423,694	-		RR42_RS20420	0.45	-2.3
4,423,711	+		RR42_RS20420	0.46	+0.3
4,423,712	-		RR42_RS20420	0.46	+0.5
4,423,783	-		RR42_RS20420	0.50	-2.4
4,423,803	+		RR42_RS20420	0.51	-1.4
4,423,803	+		RR42_RS20420	0.51	+1.3
4,423,803	+		RR42_RS20420	0.51	-1.3
4,423,803	+		RR42_RS20420	0.51	+0.7
4,423,803	+		RR42_RS20420	0.51	+0.3
4,423,803	+		RR42_RS20420	0.51	-1.7
4,423,804	-		RR42_RS20420	0.51	-1.3
4,423,804	-		RR42_RS20420	0.51	-0.3
4,423,804	-		RR42_RS20420	0.51	+0.2
4,423,804	-		RR42_RS20420	0.51	-0.8
4,423,804	-		RR42_RS20420	0.51	+0.8
4,423,805	+		RR42_RS20420	0.51	+0.4
4,423,806	-		RR42_RS20420	0.51	+0.2
4,423,806	-		RR42_RS20420	0.51	+0.0
4,423,806	-		RR42_RS20420	0.51	-0.8
4,423,965	+		RR42_RS20420	0.60	-1.7
4,423,965	+		RR42_RS20420	0.60	+0.5
4,423,965	+		RR42_RS20420	0.60	+0.4
4,423,965	+		RR42_RS20420	0.60	-3.4
4,423,966	-		RR42_RS20420	0.60	-2.1
4,423,971	+		RR42_RS20420	0.61	+0.1
4,423,971	+		RR42_RS20420	0.61	-1.0
4,423,971	+		RR42_RS20420	0.61	-0.3
4,423,971	+		RR42_RS20420	0.61	-0.3
4,423,972	-		RR42_RS20420	0.61	+0.4
4,423,972	-		RR42_RS20420	0.61	+0.8
4,424,013	+		RR42_RS20420	0.63	-0.0
4,424,014	-		RR42_RS20420	0.63	+1.3
4,424,014	-		RR42_RS20420	0.63	+1.6
4,424,073	+		RR42_RS20420	0.66	-1.3
4,424,074	-		RR42_RS20420	0.66	-1.0
4,424,075	+		RR42_RS20420	0.67	-2.2
4,424,075	+		RR42_RS20420	0.67	-2.2
4,424,076	-		RR42_RS20420	0.67	+0.4
4,424,076	-		RR42_RS20420	0.67	-0.5
4,424,220	+		RR42_RS20420	0.75	-1.4
4,424,220	+		RR42_RS20420	0.75	+0.7
4,424,252	-		RR42_RS20420	0.77	+1.6
4,424,385	+		RR42_RS20420	0.84	-1.7
4,424,385	+		RR42_RS20420	0.84	-0.9
4,424,385	+		RR42_RS20420	0.84	+0.2
4,424,385	+		RR42_RS20420	0.84	-1.9
4,424,385	+		RR42_RS20420	0.84	-0.2
4,424,386	-		RR42_RS20420	0.84	+1.4
4,424,386	-		RR42_RS20420	0.84	-2.5
4,424,386	-		RR42_RS20420	0.84	+0.7
4,424,387	+		RR42_RS20420	0.85	+1.6
4,424,538	+				-1.8
4,424,538	+				-0.2
4,424,538	+				-2.1
4,424,538	+				+0.3
4,424,539	-				-0.5
4,424,539	-				-0.0
4,424,539	-				-0.7
4,424,539	-				-0.1
4,424,539	-				-0.8
4,424,544	+				-0.3
4,424,544	+				-0.6
4,424,544	+				-0.7
4,424,544	+				-0.7
4,424,545	-				-1.1
4,424,545	-				-0.5
4,424,545	-				-0.0
4,424,545	-				+0.9
4,424,594	+				-0.1
4,424,843	+		RR42_RS20425	0.31	+0.0
4,424,843	+		RR42_RS20425	0.31	-0.4
4,424,844	-		RR42_RS20425	0.31	+1.2
4,424,856	+		RR42_RS20425	0.32	-0.1
4,424,858	+		RR42_RS20425	0.33	+1.6
4,424,859	-		RR42_RS20425	0.33	-0.6
4,424,905	-		RR42_RS20425	0.40	-0.2
4,425,058	+		RR42_RS20425	0.62	+0.4
4,425,059	-		RR42_RS20425	0.63	-0.9
4,425,263	-				+0.7
4,425,263	-				-0.4
4,425,263	-				+0.2
4,425,340	+				-3.4
4,425,340	+				-0.1
4,425,341	-				+0.5