Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20270

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
4,383,859	+				+0.1
4,383,860	-				-1.0
4,384,184	+		RR42_RS20265	0.38	-1.3
4,384,304	+		RR42_RS20265	0.49	-2.0
4,384,304	+		RR42_RS20265	0.49	-1.1
4,384,305	-		RR42_RS20265	0.49	+1.5
4,384,305	-		RR42_RS20265	0.49	+0.0
4,384,305	-		RR42_RS20265	0.49	+1.2
4,384,305	-		RR42_RS20265	0.49	-0.5
4,384,307	+		RR42_RS20265	0.50	+1.1
4,384,307	+		RR42_RS20265	0.50	-1.6
4,384,307	+		RR42_RS20265	0.50	-0.6
4,384,307	+		RR42_RS20265	0.50	+1.3
4,384,308	-		RR42_RS20265	0.50	-0.4
4,384,308	-		RR42_RS20265	0.50	+0.6
4,384,391	+		RR42_RS20265	0.58	-0.6
4,384,392	-		RR42_RS20265	0.58	+1.0
4,384,454	+		RR42_RS20265	0.64	+0.6
4,384,454	+		RR42_RS20265	0.64	-1.3
4,384,454	+		RR42_RS20265	0.64	-1.5
4,384,454	+		RR42_RS20265	0.64	-2.4
4,384,455	-		RR42_RS20265	0.64	-0.6
4,384,455	-		RR42_RS20265	0.64	-0.5
4,384,455	-		RR42_RS20265	0.64	+0.4
4,384,481	+		RR42_RS20265	0.67	-0.3
4,384,482	-		RR42_RS20265	0.67	+0.4
4,384,493	+		RR42_RS20265	0.68	-0.9
4,384,493	+		RR42_RS20265	0.68	+0.4
4,384,493	+		RR42_RS20265	0.68	+0.2
4,384,494	-		RR42_RS20265	0.68	+0.1
4,384,577	+		RR42_RS20265	0.76	+0.7
4,384,578	+		RR42_RS20265	0.76	-0.1
4,384,580	+		RR42_RS20265	0.76	-0.1
4,384,629	+		RR42_RS20265	0.81	-0.2
4,384,629	+		RR42_RS20265	0.81	-0.4
4,384,631	+		RR42_RS20265	0.81	-0.3
4,384,749	-				+1.2
4,384,912	+				+0.5
4,384,912	+				+0.1
4,385,185	+		RR42_RS20270	0.41	-0.2
4,385,185	+		RR42_RS20270	0.41	-0.6
4,385,186	-		RR42_RS20270	0.41	-1.8
4,385,186	-		RR42_RS20270	0.41	-1.0
4,385,216	-		RR42_RS20270	0.44	-0.0
4,385,216	-		RR42_RS20270	0.44	-0.2
4,385,326	+		RR42_RS20270	0.57	+0.7
4,385,407	+		RR42_RS20270	0.66	-0.3
4,385,407	+		RR42_RS20270	0.66	-0.1
4,385,408	-		RR42_RS20270	0.66	+0.3
4,385,408	-		RR42_RS20270	0.66	-0.1
4,385,408	-		RR42_RS20270	0.66	-0.1
4,385,408	-		RR42_RS20270	0.66	+0.8
4,385,408	-		RR42_RS20270	0.66	-2.9
4,385,411	+		RR42_RS20270	0.66	-0.1
4,385,411	+		RR42_RS20270	0.66	-2.1
4,385,412	-		RR42_RS20270	0.66	-2.2
4,385,412	-		RR42_RS20270	0.66	-2.6
4,385,412	-		RR42_RS20270	0.66	+0.2
4,385,425	+		RR42_RS20270	0.68	-1.5
4,385,425	+		RR42_RS20270	0.68	-2.4
4,385,426	-		RR42_RS20270	0.68	-0.7
4,385,426	-		RR42_RS20270	0.68	-1.3
4,385,426	-		RR42_RS20270	0.68	-1.6
4,385,506	+		RR42_RS20270	0.77	+0.2
4,385,635	+				+0.2
4,385,635	+				+0.5
4,385,635	+				-0.5
4,385,636	-				+0.4
4,385,636	-				-1.7
4,385,636	-				+1.4
4,385,665	-				-0.4
4,385,665	-				-0.7
4,385,665	-				+0.2
4,385,847	+				+0.3
4,385,847	+				-1.2
4,385,848	-				+1.0
4,385,862	+				+0.1
4,385,862	+				+1.5
4,385,862	+				-1.2
4,385,890	-				-1.3
4,385,890	-				-1.4
4,385,970	+				+0.0
4,385,971	-				-1.4
4,386,018	+		RR42_RS20275	0.11	-0.1
4,386,018	+		RR42_RS20275	0.11	-0.2
4,386,019	-		RR42_RS20275	0.11	-0.2
4,386,019	-		RR42_RS20275	0.11	-0.8
4,386,019	-		RR42_RS20275	0.11	+1.3
4,386,055	-		RR42_RS20275	0.14	-0.2
4,386,066	+		RR42_RS20275	0.15	-0.7
4,386,067	-		RR42_RS20275	0.15	+0.2
4,386,067	-		RR42_RS20275	0.15	+1.2
4,386,067	-		RR42_RS20275	0.15	+0.6
4,386,150	+		RR42_RS20275	0.22	+0.5
4,386,151	-		RR42_RS20275	0.22	-0.7
4,386,151	-		RR42_RS20275	0.22	+0.2
4,386,154	+		RR42_RS20275	0.22	+0.5
4,386,154	+		RR42_RS20275	0.22	-0.5
4,386,155	-		RR42_RS20275	0.22	-1.0
4,386,258	+		RR42_RS20275	0.31	+0.9
4,386,258	+		RR42_RS20275	0.31	+0.2
4,386,570	+		RR42_RS20275	0.56	+1.3
4,386,571	-		RR42_RS20275	0.56	+0.3
4,386,571	-		RR42_RS20275	0.56	-0.5
4,386,628	+		RR42_RS20275	0.61	-0.1
4,386,654	+		RR42_RS20275	0.63	+0.7
4,386,654	+		RR42_RS20275	0.63	-0.7
4,386,654	+		RR42_RS20275	0.63	+0.7
4,386,654	+		RR42_RS20275	0.63	+0.3
4,386,654	+		RR42_RS20275	0.63	-0.8
4,386,654	+		RR42_RS20275	0.63	-2.0
4,386,655	-		RR42_RS20275	0.63	+0.7
4,386,660	+		RR42_RS20275	0.64	-0.7
4,386,661	-		RR42_RS20275	0.64	+0.6
4,386,672	+		RR42_RS20275	0.65	+0.6
4,386,673	-		RR42_RS20275	0.65	+0.4