Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17905

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,874,246	+		RR42_RS17895	0.71	+0.5
3,874,246	+		RR42_RS17895	0.71	-0.1
3,874,246	+		RR42_RS17895	0.71	+1.5
3,874,247	-		RR42_RS17895	0.71	-0.5
3,874,247	-		RR42_RS17895	0.71	+0.3
3,874,247	-		RR42_RS17895	0.71	-1.2
3,874,330	+		RR42_RS17895	0.87	+0.6
3,874,331	-		RR42_RS17895	0.87	+0.1
3,874,363	+				+0.4
3,874,364	-				-0.2
3,874,399	+				-0.4
3,874,575	+		RR42_RS17900	0.28	+0.8
3,874,575	+		RR42_RS17900	0.28	-0.3
3,874,575	+		RR42_RS17900	0.28	-0.9
3,874,575	+		RR42_RS17900	0.28	+0.4
3,874,576	-		RR42_RS17900	0.28	+1.2
3,874,576	-		RR42_RS17900	0.28	+0.3
3,874,576	-		RR42_RS17900	0.28	+1.1
3,874,576	-		RR42_RS17900	0.28	-1.3
3,874,576	-		RR42_RS17900	0.28	-1.5
3,874,576	-		RR42_RS17900	0.28	+0.6
3,874,576	-		RR42_RS17900	0.28	+2.2
3,874,576	-		RR42_RS17900	0.28	+0.4
3,874,606	+		RR42_RS17900	0.33	-0.7
3,874,606	+		RR42_RS17900	0.33	+0.2
3,874,606	+		RR42_RS17900	0.33	+0.9
3,874,606	+		RR42_RS17900	0.33	+1.4
3,874,606	+		RR42_RS17900	0.33	-2.0
3,874,606	+		RR42_RS17900	0.33	-2.1
3,874,607	-		RR42_RS17900	0.33	+0.3
3,874,607	-		RR42_RS17900	0.33	-0.3
3,874,607	-		RR42_RS17900	0.33	-1.2
3,874,607	-		RR42_RS17900	0.33	+1.1
3,874,607	-		RR42_RS17900	0.33	+0.7
3,874,607	-		RR42_RS17900	0.33	+1.0
3,874,607	-		RR42_RS17900	0.33	+0.4
3,874,610	+		RR42_RS17900	0.33	-1.3
3,874,610	+		RR42_RS17900	0.33	-0.9
3,874,610	+		RR42_RS17900	0.33	-0.4
3,874,611	-		RR42_RS17900	0.34	-2.0
3,874,611	-		RR42_RS17900	0.34	-0.8
3,874,611	-		RR42_RS17900	0.34	+1.0
3,874,753	+		RR42_RS17900	0.56	+0.3
3,874,754	-		RR42_RS17900	0.56	-0.0
3,874,856	+		RR42_RS17900	0.72	+1.4
3,874,856	+		RR42_RS17900	0.72	-1.7
3,875,035	+				+0.8
3,875,035	+				+0.9
3,875,053	+				+1.4
3,875,053	+				+0.4
3,875,053	+				+1.2
3,875,053	+				-2.1
3,875,054	-				+0.4
3,875,054	-				-0.6
3,875,059	-				-1.3
3,875,107	+				+0.2
3,875,274	+		RR42_RS17905	0.19	+0.1
3,875,274	+		RR42_RS17905	0.19	-0.1
3,875,332	+		RR42_RS17905	0.28	-1.2
3,875,392	+		RR42_RS17905	0.37	-0.9
3,875,392	+		RR42_RS17905	0.37	+0.3
3,875,392	+		RR42_RS17905	0.37	-1.1
3,875,392	+		RR42_RS17905	0.37	+0.3
3,875,392	+		RR42_RS17905	0.37	-0.9
3,875,393	-		RR42_RS17905	0.38	-3.3
3,875,440	-		RR42_RS17905	0.45	-0.4
3,875,456	-		RR42_RS17905	0.47	+0.4
3,875,456	-		RR42_RS17905	0.47	-1.7
3,875,569	+		RR42_RS17905	0.65	+0.7
3,875,570	-		RR42_RS17905	0.65	-0.4
3,875,652	-		RR42_RS17905	0.78	+0.7
3,875,731	-				+0.6
3,875,769	-				+1.2
3,875,886	+				+0.1
3,875,886	+				-0.0
3,875,886	+				+0.1
3,875,886	+				+0.3
3,875,887	-				-0.7
3,875,887	-				-0.8
3,875,887	-				+0.6
3,875,887	-				+0.7
3,875,931	+				-0.5
3,875,932	-				+1.2
3,876,078	+		RR42_RS17910	0.20	-0.6
3,876,129	+		RR42_RS17910	0.26	+0.7
3,876,375	+		RR42_RS17910	0.55	-0.6
3,876,375	+		RR42_RS17910	0.55	+0.3
3,876,375	+		RR42_RS17910	0.55	-0.7
3,876,375	+		RR42_RS17910	0.55	-2.2
3,876,375	+		RR42_RS17910	0.55	+0.7
3,876,375	+		RR42_RS17910	0.55	+1.2
3,876,376	-		RR42_RS17910	0.55	-0.9
3,876,376	-		RR42_RS17910	0.55	+0.6
3,876,376	-		RR42_RS17910	0.55	+0.4
3,876,376	-		RR42_RS17910	0.55	-0.2
3,876,376	-		RR42_RS17910	0.55	+1.1
3,876,379	+		RR42_RS17910	0.56	+0.8
3,876,379	+		RR42_RS17910	0.56	-0.4
3,876,379	+		RR42_RS17910	0.56	+0.5
3,876,380	-		RR42_RS17910	0.56	+0.4
3,876,380	-		RR42_RS17910	0.56	-0.1
3,876,489	+		RR42_RS17910	0.69	+0.7
3,876,644	-		RR42_RS17910	0.87	+0.2
3,876,693	+				+0.9
3,876,693	+				+0.1
3,876,693	+				-0.2
3,876,693	+				+0.2
3,876,694	-				-0.1
3,876,694	-				+0.3
3,876,694	-				-0.7
3,876,694	-				-0.3
3,876,694	-				-0.7
3,876,694	-				+0.1
3,876,694	-				+1.1
3,876,694	-				+1.4
3,876,718	-				-1.7