Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17575 and RR42_RS17580 are separated by 130 nucleotides RR42_RS17580 and RR42_RS17585 are separated by 72 nucleotides RR42_RS17585 and RR42_RS17590 overlap by 1 nucleotides
RR42_RS17575: RR42_RS17575 - transketolase, at 3,803,338 to 3,805,374
_RS17575
RR42_RS17580: RR42_RS17580 - spermidine synthase, at 3,805,505 to 3,806,341
_RS17580
RR42_RS17585: RR42_RS17585 - glyoxalase, at 3,806,414 to 3,806,854
_RS17585
RR42_RS17590: RR42_RS17590 - 16S rRNA methyltransferase, at 3,806,854 to 3,807,612
_RS17590
Position (kb) 3805
3806
3807 Strain fitness (log2 ratio) -2
-1
0
1 at 3805.431 kb on + strand at 3805.432 kb on - strand at 3805.432 kb on - strand at 3805.432 kb on - strand at 3805.635 kb on + strand, within RR42_RS17580 at 3805.635 kb on + strand, within RR42_RS17580 at 3805.635 kb on + strand, within RR42_RS17580 at 3805.635 kb on + strand, within RR42_RS17580 at 3805.636 kb on - strand, within RR42_RS17580 at 3805.636 kb on - strand, within RR42_RS17580 at 3805.636 kb on - strand, within RR42_RS17580 at 3805.636 kb on - strand, within RR42_RS17580 at 3805.765 kb on - strand, within RR42_RS17580 at 3805.926 kb on + strand, within RR42_RS17580 at 3806.072 kb on - strand, within RR42_RS17580 at 3806.258 kb on + strand at 3806.258 kb on + strand at 3806.339 kb on + strand at 3806.339 kb on + strand at 3806.340 kb on - strand at 3806.450 kb on + strand at 3806.489 kb on + strand, within RR42_RS17585 at 3806.489 kb on + strand, within RR42_RS17585 at 3806.490 kb on - strand, within RR42_RS17585 at 3806.490 kb on - strand, within RR42_RS17585 at 3806.490 kb on - strand, within RR42_RS17585 at 3806.490 kb on - strand, within RR42_RS17585 at 3806.564 kb on + strand, within RR42_RS17585 at 3806.564 kb on + strand, within RR42_RS17585 at 3806.565 kb on - strand, within RR42_RS17585 at 3806.663 kb on + strand, within RR42_RS17585 at 3806.663 kb on + strand, within RR42_RS17585 at 3806.663 kb on + strand, within RR42_RS17585 at 3806.663 kb on + strand, within RR42_RS17585 at 3806.664 kb on - strand, within RR42_RS17585 at 3806.664 kb on - strand, within RR42_RS17585 at 3806.664 kb on - strand, within RR42_RS17585 at 3806.664 kb on - strand, within RR42_RS17585 at 3806.669 kb on + strand, within RR42_RS17585 at 3806.669 kb on + strand, within RR42_RS17585 at 3806.669 kb on + strand, within RR42_RS17585 at 3806.670 kb on - strand, within RR42_RS17585 at 3806.762 kb on + strand, within RR42_RS17585 at 3807.327 kb on - strand, within RR42_RS17590 at 3807.327 kb on - strand, within RR42_RS17590
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 3,805,431 + -0.4 3,805,432 - +0.1 3,805,432 - +0.5 3,805,432 - +0.9 3,805,635 + RR42_RS17580 0.16 -1.5 3,805,635 + RR42_RS17580 0.16 -1.9 3,805,635 + RR42_RS17580 0.16 +0.0 3,805,635 + RR42_RS17580 0.16 -1.4 3,805,636 - RR42_RS17580 0.16 +1.4 3,805,636 - RR42_RS17580 0.16 +1.2 3,805,636 - RR42_RS17580 0.16 -0.1 3,805,636 - RR42_RS17580 0.16 +0.6 3,805,765 - RR42_RS17580 0.31 +1.5 3,805,926 + RR42_RS17580 0.50 +0.1 3,806,072 - RR42_RS17580 0.68 -0.1 3,806,258 + +1.0 3,806,258 + +0.2 3,806,339 + -2.3 3,806,339 + -1.9 3,806,340 - +0.4 3,806,450 + +0.1 3,806,489 + RR42_RS17585 0.17 +0.5 3,806,489 + RR42_RS17585 0.17 +0.8 3,806,490 - RR42_RS17585 0.17 -0.4 3,806,490 - RR42_RS17585 0.17 -1.2 3,806,490 - RR42_RS17585 0.17 +0.9 3,806,490 - RR42_RS17585 0.17 +1.6 3,806,564 + RR42_RS17585 0.34 -0.4 3,806,564 + RR42_RS17585 0.34 -1.4 3,806,565 - RR42_RS17585 0.34 +1.0 3,806,663 + RR42_RS17585 0.56 -0.6 3,806,663 + RR42_RS17585 0.56 -1.2 3,806,663 + RR42_RS17585 0.56 +0.2 3,806,663 + RR42_RS17585 0.56 -0.2 3,806,664 - RR42_RS17585 0.57 -0.9 3,806,664 - RR42_RS17585 0.57 +0.5 3,806,664 - RR42_RS17585 0.57 -0.2 3,806,664 - RR42_RS17585 0.57 +1.0 3,806,669 + RR42_RS17585 0.58 +0.0 3,806,669 + RR42_RS17585 0.58 +0.2 3,806,669 + RR42_RS17585 0.58 -0.1 3,806,670 - RR42_RS17585 0.58 +0.5 3,806,762 + RR42_RS17585 0.79 -0.4 3,807,327 - RR42_RS17590 0.62 -1.9 3,807,327 - RR42_RS17590 0.62 +1.4
Or see this region's nucleotide sequence