Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17355 and RR42_RS17360 are separated by 55 nucleotides RR42_RS17360 and RR42_RS17365 are separated by 65 nucleotides RR42_RS17365 and RR42_RS17370 are separated by 92 nucleotides RR42_RS17370 and RR42_RS17375 are separated by 77 nucleotides RR42_RS17375 and RR42_RS17380 are separated by 77 nucleotides
RR42_RS17355: RR42_RS17355 - hypothetical protein, at 3,756,274 to 3,757,002
_RS17355
RR42_RS17360: RR42_RS17360 - pyrroline-5-carboxylate reductase, at 3,757,058 to 3,757,882
_RS17360
RR42_RS17365: RR42_RS17365 - 4-hydroxybenzoate polyprenyltransferase, at 3,757,948 to 3,758,841
_RS17365
RR42_RS17370: RR42_RS17370 - ferritin, at 3,758,934 to 3,759,419
_RS17370
RR42_RS17375: RR42_RS17375 - hypothetical protein, at 3,759,497 to 3,759,691
_RS17375
RR42_RS17380: RR42_RS17380 - catalase, at 3,759,769 to 3,761,214
_RS17380
Position (kb)
3757
3758
3759 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3757.961 kb on + strand at 3757.961 kb on + strand at 3757.961 kb on + strand at 3757.961 kb on + strand at 3757.962 kb on - strand at 3759.422 kb on + strand at 3759.563 kb on + strand, within RR42_RS17375 at 3759.770 kb on + strand at 3759.771 kb on - strand at 3759.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 3,757,961 + +0.1 3,757,961 + -1.1 3,757,961 + -0.4 3,757,961 + -2.5 3,757,962 - +1.6 3,759,422 + -2.8 3,759,563 + RR42_RS17375 0.34 -2.9 3,759,770 + +1.0 3,759,771 - +0.1 3,759,771 - +2.0
Or see this region's nucleotide sequence